New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1702257 =112 (1.140)17 (0.200) 9/138 NT 16.5% intergenic (‑1/+48) comEA/tylM1 ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase
?USA300TCH1516_ALE 1702302 = 75 (0.880)intergenic (‑46/+3) comEA/tylM1 ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase

Only 100 of 151 total aligned reads displayed.

AATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTA  >  USA300TCH1516_ALE/1702167‑1702347
                                                                                          |                                                                                          
tttaaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagt                                                                                            <  1:2465183‑M1/1‑1 (MQ=255)
tttaaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagt                                                                                            >  1:2901145‑M1/91‑91 (MQ=255)
   aaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTaaa                                                                                         >  1:2658766‑M1/88‑91 (MQ=255)
    aacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTaaaa                                                                                        >  1:4107756‑M1/87‑91 (MQ=255)
    aacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTaaaa                                                                                        >  1:534043‑M1/87‑91 (MQ=255)
    aacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTaaaa                                                                                        <  1:2889195‑M1/5‑1 (MQ=255)
    aaTACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATaaaa                                                                                        <  1:2168034/91‑1 (MQ=255)
      tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAAcc                                                                                      <  1:367328/91‑1 (MQ=255)
      tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAAcc                                                                                      <  1:1467367/91‑1 (MQ=255)
       aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCa                                                                                     <  1:3651569/91‑1 (MQ=255)
        tgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCAc                                                                                    <  1:3641710‑M1/9‑1 (MQ=255)
        ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCAc                                                                                    >  1:106284/1‑91 (MQ=255)
        ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCAc                                                                                    >  1:3902426/1‑91 (MQ=255)
        ccATAATTAAAACAACAGCACTTAGAATATAGAACTTCCATTGAGTTAAAAAATCTTAATAGCGTAATAAAAATTGATACAATAAAACCAc                                                                                    >  1:3685757/1‑91 (MQ=255)
         gttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCAct                                                                                   <  1:3522143‑M1/10‑1 (MQ=255)
         gttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCAct                                                                                   >  1:3744828‑M1/82‑91 (MQ=255)
         gttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCAct                                                                                   <  1:2358355‑M1/10‑1 (MQ=255)
          ttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCActc                                                                                  <  1:2727495‑M1/11‑1 (MQ=255)
             aTTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCActcctc                                                                               <  1:1981214/91‑1 (MQ=255)
             aTTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCActcctc                                                                               <  1:2862189/91‑1 (MQ=255)
               tAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCGCaa                                                                             >  1:3734735/1‑91 (MQ=255)
                aaaaCAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAAc                                                                            <  1:2543606/91‑1 (MQ=255)
                  aacaacAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACtt                                                                          >  1:1920783/1‑91 (MQ=255)
                  aacaacAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACtt                                                                          >  1:2766628/1‑91 (MQ=255)
                  aacaacAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACtt                                                                          >  1:3954976/1‑91 (MQ=255)
                  aacaacAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACtt                                                                          <  1:1336794/91‑1 (MQ=255)
                    caacaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTta                                                                        <  1:2446935/91‑1 (MQ=255)
                    caacaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTta                                                                        <  1:2758068/91‑1 (MQ=255)
                     aacaCCACTTAGAATATATAACTTCCATTGAGTTAAAAATCTTTATCGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTtata                                                                      >  1:3274069/1‑91 (MQ=255)
                      acaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTtata                                                                      >  1:334959/1‑91 (MQ=255)
                      acaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTtata                                                                      >  1:903259/1‑91 (MQ=255)
                       caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATac                                                                     <  1:1143477/91‑1 (MQ=255)
                        aGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATaca                                                                    <  1:1016789/91‑1 (MQ=255)
                          cACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACg                                                                  >  1:1583347/1‑91 (MQ=255)
                          cACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACg                                                                  >  1:1943563/1‑91 (MQ=255)
                           aCTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGt                                                                 >  1:1078911/1‑91 (MQ=255)
                            cTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTc                                                                <  1:1386325/91‑1 (MQ=255)
                              tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTg                                                              <  1:2651045/91‑1 (MQ=255)
                              aatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTg                                                              >  1:1857118‑M1/61‑91 (MQ=255)
                                    gatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAg                                                        >  1:3932170‑M1/55‑91 (MQ=255)
                                    gatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAg                                                        >  1:472564‑M1/55‑91 (MQ=255)
                                    atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAg                                                        <  1:926644/91‑1 (MQ=255)
                                    atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAg                                                        <  1:3840006/91‑1 (MQ=255)
                                    atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAg                                                        <  1:3840103/91‑1 (MQ=255)
                                    atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAg                                                        <  1:1876038/91‑1 (MQ=255)
                                     tataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGt                                                       >  1:864361/1‑91 (MQ=255)
                                     atgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGt                                                       >  1:834576‑M1/54‑91 (MQ=255)
                                      tgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTg                                                      >  1:3388693‑M1/53‑91 (MQ=255)
                                      ataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTg                                                      >  1:3498471/1‑91 (MQ=255)
                                       taACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTgg                                                     >  1:737653/1‑91 (MQ=255)
                                        aaCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGt                                                    >  1:967566/1‑91 (MQ=255)
                                        aaCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGACTGGt                                                    >  1:3453518/1‑91 (MQ=255)
                                         aCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGtt                                                   <  1:3607415/91‑1 (MQ=255)
                                         aCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGtt                                                   >  1:2222500/1‑91 (MQ=255)
                                          cataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGttt                                                  >  1:438586‑M1/49‑91 (MQ=255)
                                          cataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGttt                                                  >  1:731560‑M1/49‑91 (MQ=255)
                                               aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtt                                             <  1:1237244/91‑1 (MQ=255)
                                                ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCTACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                            <  1:3591009/91‑1 (MQ=255)
                                                ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                            >  1:2306283/1‑91 (MQ=255)
                                                ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                            <  1:2578598/91‑1 (MQ=255)
                                                ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                            <  1:919971/91‑1 (MQ=255)
                                                ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                            <  1:2187860/91‑1 (MQ=255)
                                                ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                            <  1:2186208/91‑1 (MQ=255)
                                                ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                            <  1:1959228/91‑1 (MQ=255)
                                                ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTCATACACGTCTGAGCGAGTGGTTTTACttt                                            >  1:2306033/1‑91 (MQ=255)
                                                gaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                            >  1:1644517‑M1/43‑91 (MQ=255)
                                                 tGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtttt                                           >  1:1330573/1‑91 (MQ=255)
                                                    gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt                                        >  1:311874/1‑91 (MQ=255)
                                                    gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt                                        <  1:84249/91‑1 (MQ=255)
                                                      tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttt                                      <  1:940526/91‑1 (MQ=255)
                                                      tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttt                                      <  1:940543/91‑1 (MQ=255)
                                                       aaaaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAttttt                                     >  1:1788678/1‑91 (MQ=255)
                                                           aaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGc                                 <  1:2803283/91‑1 (MQ=255)
                                                           aaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGc                                 <  1:3386550/91‑1 (MQ=255)
                                                           aaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGc                                 >  1:3243438/1‑91 (MQ=255)
                                                           aaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGc                                 <  1:2004467/91‑1 (MQ=255)
                                                            aTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa                                >  1:1417299/1‑91 (MQ=255)
                                                            aTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa                                >  1:4039224/1‑91 (MQ=255)
                                                            aTCTTTACAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAGTTTTTCGCa                                <  1:2082624/91‑1 (MQ=255)
                                                              cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt                              >  1:3411449/1‑91 (MQ=255)
                                                              cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt                              >  1:215387/1‑91 (MQ=255)
                                                                ttATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGa                            >  1:1019583/1‑91 (MQ=255)
                                                                ttATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGa                            <  1:498103/91‑1 (MQ=255)
                                                                 tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa                           >  1:2222269/1‑91 (MQ=255)
                                                                     gCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTTGCAATGAAAAAc                       <  1:3185625/91‑1 (MQ=255)
                                                                       gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACaa                     >  1:2312860/1‑91 (MQ=255)
                                                                       gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACaa                     <  1:2731412/91‑1 (MQ=255)
                                                                       gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACaa                     <  1:1403141/91‑1 (MQ=255)
                                                                        taataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAAt                    <  1:2612321/91‑1 (MQ=255)
                                                                         aataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                   <  1:3978845/91‑1 (MQ=255)
                                                                          ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt                  >  1:138189/1‑91 (MQ=255)
                                                                             aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc               >  1:4031178/1‑91 (MQ=255)
                                                                               aaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTg             <  1:483873/91‑1 (MQ=255)
                                                                                aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc            <  1:1437650/91‑1 (MQ=255)
                                                                                 ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCa           >  1:318641/1‑91 (MQ=255)
                                                                                   gATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATc         >  1:2433919/1‑91 (MQ=255)
                                                                                      aCAATAAAATCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc      >  1:2088238/1‑91 (MQ=255)
                                                                                      aCAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc      <  1:1634739/91‑1 (MQ=255)
                                                                                        aaTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAt    <  1:3211559/91‑1 (MQ=255)
                                                                                          TAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTa  >  1:1569281‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
AATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTA  >  USA300TCH1516_ALE/1702167‑1702347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.