| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1721519 = | 80 (0.810) | 5 (0.060) | 5/142 | NT | 6.2% | intergenic (‑236/+49) | USA300HOU_RS08595/USA300HOU_RS08600 | Putative O‑methyltransferase/MSMEI_4947/hypothetical protein |
| ? | USA300TCH1516_ALE | 1721556 = | 80 (0.920) | intergenic (‑273/+12) | USA300HOU_RS08595/USA300HOU_RS08600 | Putative O‑methyltransferase/MSMEI_4947/hypothetical protein | |||||
AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1721617‑1721519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACC > USA300TCH1516_ALE/1721556‑1721645 AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGG > 1:740899/1‑91AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGG > 1:3445529/1‑91 AGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGC < 1:1433993/91‑1 GAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCA < 1:889718/91‑1 GAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCA < 1:3368546/91‑1 AATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAA < 1:2141224/91‑1 ATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG < 1:18013/91‑1 ATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG > 1:3271047/1‑91 ATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG < 1:2302194/91‑1 ATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG < 1:1869513/91‑1 TGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGA < 1:483166/91‑1 TGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGA < 1:483312/91‑1 TGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGA > 1:3052837/1‑91 GGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAG < 1:1691276/91‑1 GGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAG < 1:612226/91‑1 GGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGT < 1:3976321/91‑1 GGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGT < 1:1029622/91‑1 GGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGT < 1:1025498/91‑1 GACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA > 1:1449731/1‑91 GACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA > 1:1449764/1‑91 ACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCC > 1:2573474/1‑91 CTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAT > 1:683867/1‑91 TTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATT > 1:2826053/1‑91 TGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTC > 1:3722492/1‑91 ACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCAT > 1:2417410/1‑91 GCAAGAGTNAAANCNTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACT < 1:593136/91‑1 GCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACT > 1:994685/1‑91 GCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACT > 1:196130/1‑91 GCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACT < 1:2518538/91‑1 AGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAAC < 1:1534983/91‑1 AGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTT > 1:1498629/1‑91 AGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCCTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTT > 1:3308976/1‑91 GTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTA < 1:3799358/91‑1 GTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTA > 1:346244/1‑91 AAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACC < 1:477276/91‑1 AAAATCTTTGTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACC < 1:3963934/91‑1 AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1721617‑1721519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACC > USA300TCH1516_ALE/1721556‑1721645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |