BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1721519 =	80 (0.810)	5 (0.060)	5/142	NT	6.2%	intergenic (‑236/+49)	USA300HOU_RS08595/USA300HOU_RS08600	Putative O‑methyltransferase/MSMEI_4947/hypothetical protein
*	?	USA300TCH1516_ALE	1721556 =	80 (0.920)	5 (0.060)	5/142	NT	6.2%	intergenic (‑273/+12)	USA300HOU_RS08595/USA300HOU_RS08600	Putative O‑methyltransferase/MSMEI_4947/hypothetical protein

Only 100 of 141 total aligned reads displayed.

TTTCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACCA  >  USA300TCH1516_ALE/1721467‑1721646

tttCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTaaa                                                                                           <  1:4008442/91‑1 (MQ=255)

tttCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTaaa                                                                                           <  1:2992231/91‑1 (MQ=255)

  tCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAAt                                                                                         <  1:4073631/91‑1 (MQ=255)

   cAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATc                                                                                        >  1:3942954/1‑91 (MQ=255)

   cAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATc                                                                                        >  1:3943191/1‑91 (MQ=255)

   cAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATc                                                                                        >  1:228211/1‑91 (MQ=255)

    aaTAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCt                                                                                       >  1:1647323/1‑91 (MQ=255)

      tAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCttt                                                                                     <  1:912474/91‑1 (MQ=255)

      tAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCttt                                                                                     <  1:1504004/91‑1 (MQ=255)

       aaaaTTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGGGTAAAATCtttt                                                                                    <  1:3201554/91‑1 (MQ=255)

       aaaaTTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCtttt                                                                                    >  1:982263/1‑91 (MQ=255)

        aaaTTATGAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCttttt                                                                                   <  1:2063769/91‑1 (MQ=255)

        aaaTTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCttttt                                                                                   >  1:2280741/1‑91 (MQ=255)

        aaaTTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCttttt                                                                                   >  1:224794/1‑91 (MQ=255)

            tataAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTAGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAatt                                                                               >  1:3295873/1‑91 (MQ=255)

             ataAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAatta                                                                              >  1:3416702/1‑91 (MQ=255)

              taAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattat                                                                             >  1:1463082/1‑91 (MQ=255)

              taAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattat                                                                             <  1:3584412/91‑1 (MQ=255)

               aaGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattatt                                                                            <  1:3758102/91‑1 (MQ=255)

               aaGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattatt                                                                            <  1:3336286/91‑1 (MQ=255)

               aaGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattatt                                                                            >  1:1295870/1‑91 (MQ=255)

                aGCGTTAATTATTTATACATTGCTTGACTTAAACAATCCTCTTGCCGCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTAttc                                                                           >  1:3306297/1‑91 (MQ=255)

                  cGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCACGAGTAAAATCTTTTTAATTAttctt                                                                         >  1:2815857/1‑91 (MQ=255)

                     tAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCa                                                                      <  1:2062686/91‑1 (MQ=255)

                     tAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCa                                                                      >  1:3564498/1‑91 (MQ=255)

                     tAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCa                                                                      <  1:1114625/91‑1 (MQ=255)

                         tatttatACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTc                                                                  <  1:2540054/91‑1 (MQ=255)

                          atttatACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCa                                                                 <  1:1464482/91‑1 (MQ=255)

                           tttatACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAg                                                                <  1:207525/91‑1 (MQ=255)

                           tttatACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAg                                                                <  1:2571191/91‑1 (MQ=255)

                            ttatACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGt                                                               <  1:4131502/91‑1 (MQ=255)

                               taCATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTAtt                                                            >  1:1725614/1‑91 (MQ=255)

                               taCATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTAtt                                                            <  1:4112358/91‑1 (MQ=255)

                               taCATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTAtt                                                            <  1:2623130/91‑1 (MQ=255)

                               taCATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTAtt                                                            <  1:486353/91‑1 (MQ=255)

                                aCATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTAttt                                                           >  1:2531461/1‑91 (MQ=255)

                                  aTTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTAc                                                         >  1:3834689/1‑91 (MQ=255)

                                    tGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACaa                                                       <  1:132130/91‑1 (MQ=255)

                                     gCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAAc                                                      >  1:1975893/1‑91 (MQ=255)

                                      cTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAAct                                                     <  1:3279518/91‑1 (MQ=255)

                                      cTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAAct                                                     >  1:221877/1‑91 (MQ=255)

                                      cTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAAct                                                     <  1:2160073/91‑1 (MQ=255)

                                       ttGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAActt                                                    >  1:591069/1‑91 (MQ=255)

                                            ttAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCa                                               <  1:840562/91‑1 (MQ=255)

                                               aaaaaTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATc                                            >  1:4037507/1‑91 (MQ=255)

                                               aaaaaTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAAATTCTTCAATc                                            <  1:3634021/91‑1 (MQ=255)

                                                aaaaTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCa                                           >  1:147183/1‑91 (MQ=255)

                                                aaaaTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCa                                           >  1:294132/1‑91 (MQ=255)

                                                 aaaTACTCTTGCCTCCCCATCTTTAAGGTTAGTAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCAt                                          <  1:3524003/91‑1 (MQ=255)

                                                 aaaTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCAt                                          <  1:1164480/91‑1 (MQ=255)

                                                  aaTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATg                                         <  1:3886545/91‑1 (MQ=255)

                                                   aTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGt                                        <  1:3876578/91‑1 (MQ=255)

                                                    TACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTc                                       >  1:1449764‑M1/1‑91 (MQ=255)

                                                     ACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTcc                                      <  1:1025498‑M1/91‑1 (MQ=255)

                                                     ACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTcc                                      <  1:3976321‑M1/91‑1 (MQ=255)

                                                      CTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTccc                                     <  1:612226‑M1/91‑1 (MQ=255)

                                                       TCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCa                                    >  1:3052837‑M1/1‑91 (MQ=255)

                                                       TCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCa                                    <  1:483312‑M1/91‑1 (MQ=255)

                                                        cttgctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAt                                   >  1:683867‑M2/34‑91 (MQ=255)

                                                        CTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAt                                   >  1:3271047‑M1/1‑91 (MQ=255)

                                                        CTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAt                                   <  1:1869513‑M1/91‑1 (MQ=255)

                                                        CTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAt                                   <  1:2302194‑M1/91‑1 (MQ=255)

                                                         ttgctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAtt                                  >  1:2826053‑M2/33‑91 (MQ=255)

                                                         TTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAtt                                  <  1:2141224‑M1/91‑1 (MQ=255)

                                                          tgctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttc                                 >  1:3722492‑M2/32‑91 (MQ=255)

                                                          TGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttc                                 <  1:3368546‑M1/91‑1 (MQ=255)

                                                          TGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttc                                 <  1:889718‑M1/91‑1 (MQ=255)

                                                           GCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttct                                <  1:1433993‑M1/91‑1 (MQ=255)

                                                            CCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttctt                               >  1:3445529‑M1/1‑91 (MQ=255)

                                                            CCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttctt                               >  1:740899‑M1/1‑91 (MQ=255)

                                                               ccccATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTtcat                            <  1:1743825/91‑1 (MQ=255)

                                                               ccccATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTtcat                            >  1:2613272/1‑91 (MQ=255)

                                                               ccccATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTtcat                            <  1:1321932/91‑1 (MQ=255)

                                                               accttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTtcat                            >  1:2417410‑M2/27‑91 (MQ=255)

                                                                cccATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTtcatc                           <  1:1973184/91‑1 (MQ=255)

                                                                cccATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTtcatc                           >  1:2963626/1‑91 (MQ=255)

                                                                 ccATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTtcatca                          <  1:2783111/91‑1 (MQ=255)

                                                                    tCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGtt                       <  1:1801605/91‑1 (MQ=255)

                                                                    tCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGtt                       <  1:3390214/91‑1 (MQ=255)

                                                                     cTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGttt                      <  1:2996254/91‑1 (MQ=255)

                                                                     cTTTAAGGTTAGCAAGAGTAAAATCGTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGttt                      <  1:3868135/91‑1 (MQ=255)

                                                                      tttAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTc                     <  1:842722/91‑1 (MQ=255)

                                                                        tAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGa                   >  1:3140400/1‑91 (MQ=255)

                                                                          aGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGAtt                 >  1:3758831/1‑91 (MQ=255)

                                                                             ttAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGt              <  1:958775/91‑1 (MQ=255)

                                                                              tAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTa             <  1:3591422/91‑1 (MQ=255)

                                                                              tAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTa             <  1:1055262/91‑1 (MQ=255)

                                                                               aGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTAc            <  1:1026023/91‑1 (MQ=255)

                                                                               aGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTAc            <  1:3425859/91‑1 (MQ=255)

                                                                               aGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTAc            <  1:1026214/91‑1 (MQ=255)

                                                                                gcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACt           <  1:2518538‑M2/82‑1 (MQ=255)

                                                                                gcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACt           >  1:196130‑M2/10‑91 (MQ=255)

                                                                                   agagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAAc        <  1:1534983‑M2/85‑1 (MQ=255)

                                                                                     agtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCCTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACtt      >  1:3308976‑M2/5‑91 (MQ=255)

                                                                                      gtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTa     <  1:3799358‑M2/88‑1 (MQ=255)

                                                                                      gtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTa     >  1:346244‑M2/4‑91 (MQ=255)

                                                                                        aAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTAcc   <  1:477276‑M2/90‑1 (MQ=255)

                                                                                         aaaTCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTacca  >  1:1450016/1‑91 (MQ=255)

                                                                                         aaaTCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTacca  >  1:2508734/1‑91 (MQ=255)

                                                                                         aaaTCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCAATTCTTCATCAGTTTCGATTGGTACTAACTTacca  >  1:2509621/1‑91 (MQ=255)

TTTCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACCA  >  USA300TCH1516_ALE/1721467‑1721646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.