| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1732959 = | 88 (0.890) | 12 (0.140) | 8/136 | NT | 12.3% | intergenic (+145/+92) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1733016 = | 97 (1.160) | intergenic (+202/+35) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein | |||||
AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1733060‑1732959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT > USA300TCH1516_ALE/1733016‑1733105 AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG < 1:3658053/91‑1AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG < 1:3653798/91‑1AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG < 1:3653437/91‑1 GAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG < 1:582107/91‑1 GAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG > 1:1113174/1‑91 GAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG > 1:1114337/1‑91 GAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG > 1:884611/1‑91 GAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG < 1:1206752/91‑1 AGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGG < 1:1897533/91‑1 AGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGG > 1:1275581/1‑91 GAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGG < 1:1373085/91‑1 GAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGG < 1:3750082/91‑1 GAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGG > 1:3613098/1‑91 tAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGC > 1:4018857/2‑91 AAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGC > 1:2707513/1‑91 AATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG > 1:1543019/1‑91 AATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG > 1:1545945/1‑91 AATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG < 1:3655135/91‑1 AATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG > 1:2323899/1‑91 AATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG > 1:399868/1‑91 ATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGC > 1:106125/1‑91 TAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT < 1:1411827/91‑1 TAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT < 1:361736/91‑1 ttATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT > 1:1022687/3‑91 ttATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT > 1:1023007/3‑91 ttATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT > 1:1771081/3‑91 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT > 1:3768556/1‑91 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT > 1:3769419/1‑91 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT > 1:3769418/1‑91 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT > 1:1768013/1‑91 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT < 1:1005079/91‑1 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT < 1:2867093/91‑1 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTCAAGGGGCGCTT > 1:3768979/1‑91 AATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT > 1:2072266/1‑91 AATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT > 1:884433/1‑91 ATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTC < 1:3797882/91‑1 ATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTC < 1:4026469/91‑1 CGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATT > 1:4072260/1‑91 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCT > 1:3234658/1‑91 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTC > 1:3306623/1‑91 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTC > 1:536842/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCT > 1:2026811/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCT > 1:1825729/1‑91 CAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTA > 1:513066/1‑91 AATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATC > 1:2101138/1‑91 ATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCT > 1:2713994/1‑91 ATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCT > 1:3069749/1‑91 ATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCT > 1:1700039/1‑91 TACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCT > 1:3602803/1‑91 GGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGAT > 1:2301654/1‑91 GGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGAT > 1:2290033/1‑91 GGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGAT < 1:1945867/91‑1 GGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGAT > 1:1235955/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 1:3289082/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 1:2006579/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 1:1261535/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 1:1186937/1‑91 ctTTTCAATATTTTG‑AAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 1:2635288/3‑91 GCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCT > 1:962459/1‑91 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 1:924310/1‑91 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG < 1:3983365/91‑1 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG < 1:3963830/91‑1 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 1:3432792/1‑91 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 1:3401407/1‑91 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 1:2229494/1‑91 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 1:2081967/1‑91 TTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGT > 1:96745/1‑91 TTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTA < 1:1522323/91‑1 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTAT > 1:2937999/1‑91 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTAT > 1:2937485/1‑91 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTAT > 1:2466651/1‑91 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTAT > 1:873815/1‑91 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTAT > 1:875443/1‑91 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTAT > 1:875634/1‑91 CAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATA < 1:3055717/91‑1 CAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATA < 1:319635/91‑1 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT > 1:1122166/1‑91 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT > 1:998805/1‑91 AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1733060‑1732959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT > USA300TCH1516_ALE/1733016‑1733105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |