BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1732959 =	88 (0.890)	12 (0.140)	8/136	NT	12.3%	intergenic (+145/+92)	limB_2/USA300HOU_RS08645	Limonene 1,2‑monooxygenase/hypothetical protein
*	?	USA300TCH1516_ALE	1733016 =	97 (1.160)	12 (0.140)	8/136	NT	12.3%	intergenic (+202/+35)	limB_2/USA300HOU_RS08645	Limonene 1,2‑monooxygenase/hypothetical protein

Only 100 of 204 total aligned reads displayed.

GATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATT  >  USA300TCH1516_ALE/1732926‑1733106

  ttCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaaaa                                                                                          >  1:1903276/1‑91 (MQ=255)

  ttCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaaaa                                                                                          >  1:266652/1‑91 (MQ=255)

    cAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAata                                                                                        <  1:2093723/91‑1 (MQ=255)

         tCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaa                                                                                   <  1:1405175/91‑1 (MQ=255)

          cACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACCCTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaaa                                                                                  >  1:3286828/1‑91 (MQ=255)

           aCTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaaaa                                                                                 <  1:2345457/91‑1 (MQ=255)

            cTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAg                                                                                >  1:1854193/1‑91 (MQ=255)

                aaaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCata                                                                            >  1:2893810/1‑91 (MQ=255)

                aaaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCata                                                                            >  1:841939/1‑91 (MQ=255)

                 aaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCatat                                                                           <  1:3679559/91‑1 (MQ=255)

                  aTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATc                                                                          >  1:2011128/1‑91 (MQ=255)

                   ttCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATcc                                                                         <  1:922632/91‑1 (MQ=255)

                   ttCTAATGCAAATATGAAAGCGCCCCTTCAACATTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATcc                                                                         <  1:3520998/91‑1 (MQ=255)

                      tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa                                                                      >  1:1881222/1‑91 (MQ=255)

                      tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa                                                                      >  1:620590/1‑91 (MQ=255)

                        aTGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAt                                                                    >  1:1347415/1‑91 (MQ=255)

                        aTGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAt                                                                    >  1:2864486/1‑91 (MQ=255)

                         tGCAAATATGAATGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAtt                                                                   >  1:3201505/1‑91 (MQ=255)

                            aaaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaa                                                                >  1:3155119/1‑91 (MQ=255)

                             aaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaaa                                                               <  1:2249935/91‑1 (MQ=255)

                             aaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaaa                                                               <  1:3058435/91‑1 (MQ=255)

                             aaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaaa                                                               <  1:520673/91‑1 (MQ=255)

                             aaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaaa                                                               >  1:2216861/1‑91 (MQ=255)

                                  GAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAat                                                          <  1:3797882‑M1/91‑1 (MQ=255)

                                   AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                         >  1:2072266‑M1/1‑91 (MQ=255)

                                   AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                         >  1:884433‑M1/1‑91 (MQ=255)

                                    AAGCGCCCCTTGAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattt                                                        >  1:3768979‑M1/1‑91 (MQ=255)

                                    AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaaataa                                                        >  1:1022687‑M1/1‑89 (MQ=255)

                                    AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattt                                                        <  1:1005079‑M1/91‑1 (MQ=255)

                                    AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattt                                                        >  1:1768013‑M1/1‑91 (MQ=255)

                                    AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattt                                                        >  1:3769419‑M1/1‑91 (MQ=255)

                                      GCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttat                                                      >  1:106125‑M1/1‑91 (MQ=255)

                                       CGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttatt                                                     >  1:1545945‑M1/1‑91 (MQ=255)

                                        GCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAaatttatta                                                    >  1:4018857‑M1/1‑90 (MQ=255)

                                        GCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttattt                                                    >  1:2707513‑M1/1‑91 (MQ=255)

                                         CCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtc                                                   <  1:1373085‑M1/91‑1 (MQ=255)

                                         CCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtc                                                   >  1:3613098‑M1/1‑91 (MQ=255)

                                          cccatcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtct                                                  >  1:3234658‑M2/49‑91 (MQ=255)

                                          CCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtct                                                  >  1:1275581‑M1/1‑91 (MQ=255)

                                           ccatcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                 >  1:536842‑M2/48‑91 (MQ=255)

                                           ccatcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                 >  1:3306623‑M2/48‑91 (MQ=255)

                                           CCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                 >  1:1113174‑M1/1‑91 (MQ=255)

                                            catcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                                >  1:1825729‑M2/47‑91 (MQ=255)

                                            CTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                                <  1:3658053‑M1/91‑1 (MQ=255)

                                            CTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                                <  1:3653798‑M1/91‑1 (MQ=255)

                                             ttCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCtt                                               >  1:1633343/1‑91 (MQ=255)

                                             ttCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCtt                                               >  1:3969382/1‑91 (MQ=255)

                                                aaCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTAt                                            >  1:1402691/1‑91 (MQ=255)

                                                 aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc                                           <  1:3174695/91‑1 (MQ=255)

                                                 aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc                                           <  1:2169631/91‑1 (MQ=255)

                                                 aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc                                           <  1:3652658/91‑1 (MQ=255)

                                                  cTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCt                                          >  1:2807353/1‑91 (MQ=255)

                                                  cTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCt                                          <  1:770984/91‑1 (MQ=255)

                                                  ataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCt                                          >  1:3069749‑M2/41‑91 (MQ=255)

                                                  ataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCt                                          >  1:1700039‑M2/41‑91 (MQ=255)

                                                     tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCa                                       <  1:3839750/91‑1 (MQ=255)

                                                     tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCa                                       <  1:2035966/91‑1 (MQ=255)

                                                         cTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCActtt                                   >  1:3345355/1‑91 (MQ=255)

                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc                                  <  1:894193/91‑1 (MQ=255)

                                                           tacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCt                                 >  1:3602803‑M2/32‑91 (MQ=255)

                                                           gtgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCt                                 >  1:3669176/1‑91 (MQ=255)

                                                            tgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtt                                >  1:3038375/1‑91 (MQ=255)

                                                            tgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtt                                >  1:860863/1‑91 (MQ=255)

                                                            tgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtt                                >  1:168374/1‑91 (MQ=255)

                                                              tAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtttt                              <  1:3999652/91‑1 (MQ=255)

                                                              tAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtttt                              <  1:2945727/91‑1 (MQ=255)

                                                              tAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtttt                              <  1:1988078/91‑1 (MQ=255)

                                                                aGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtttttt                            <  1:3566571/91‑1 (MQ=255)

                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                           >  1:4088276/1‑91 (MQ=255)

                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                           >  1:4031740/1‑91 (MQ=255)

                                                                   gtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtctc                         <  1:1471530/91‑1 (MQ=255)

                                                                    tttATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTctct                        <  1:3110705/91‑1 (MQ=255)

                                                                     ttATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCtt                       <  1:3770255/91‑1 (MQ=255)

                                                                      tATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTc                      >  1:3113426/1‑91 (MQ=255)

                                                                       aTTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCg                     <  1:165783/91‑1 (MQ=255)

                                                                        tttGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGt                    <  1:2418152/91‑1 (MQ=255)

                                                                        tttGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGt                    >  1:2311024/1‑91 (MQ=255)

                                                                           gATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAt                 >  1:477626/1‑91 (MQ=255)

                                                                           gATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAt                 <  1:3584410/91‑1 (MQ=255)

                                                                            aTGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAtt                <  1:810353/91‑1 (MQ=255)

                                                                            aTGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAtt                <  1:792382/91‑1 (MQ=255)

                                                                            aTGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAtt                <  1:3389253/91‑1 (MQ=255)

                                                                            aTGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAtt                <  1:2826543/91‑1 (MQ=255)

                                                                             tGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTc               >  1:1211647/1‑91 (MQ=255)

                                                                                ggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGAt            >  1:2290033‑M2/11‑91 (MQ=255)

                                                                                ggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGAt            >  1:1235955‑M2/11‑91 (MQ=255)

                                                                                 gcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATc           >  1:1186937‑M2/10‑91 (MQ=255)

                                                                                 gcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATc           >  1:3289082‑M2/10‑91 (MQ=255)

                                                                                   gctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCt         >  1:962459‑M2/8‑91 (MQ=255)

                                                                                   cttttcaATATTTTG‑AAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg        >  1:2635288‑M2/8‑91 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg        <  1:3983365‑M2/85‑1 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg        >  1:3432792‑M2/7‑91 (MQ=255)

                                                                                      ttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGta      <  1:1522323‑M2/87‑1 (MQ=255)

                                                                                       tcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGtat     >  1:2466651‑M2/4‑91 (MQ=255)

                                                                                       tcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGtat     >  1:875443‑M2/4‑91 (MQ=255)

                                                                                       tcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGtat     >  1:2937485‑M2/4‑91 (MQ=255)

                                                                                         aAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTatat   >  1:1122166‑M2/2‑91 (MQ=255)

                                                                                          aaaTATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAtt  <  1:1742706/91‑1 (MQ=255)

                                                                                          aaaTATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAtt  >  1:2217540/1‑91 (MQ=255)

                                                                                          aaaTATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAtt  <  1:2870249/91‑1 (MQ=255)

GATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATT  >  USA300TCH1516_ALE/1732926‑1733106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.