| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1747122 = | 113 (1.150) | 15 (0.180) | 10/132 | NT | 16.7% | intergenic (‑156/+47) | recJ/USA300HOU_RS08710 | Single‑stranded‑DNA‑specific exonuclease RecJ/Heme uptake protein MmpL11 |
| ? | USA300TCH1516_ALE | 1747161 = | 56 (0.690) | intergenic (‑195/+8) | recJ/USA300HOU_RS08710 | Single‑stranded‑DNA‑specific exonuclease RecJ/Heme uptake protein MmpL11 | |||||
AATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1747221‑1747122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGAC > USA300TCH1516_ALE/1747161‑1747248 AATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCAC > 1:2006689/1‑91 TTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACAT > 1:99720/1‑91 TTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACAT > 1:2477045/1‑91 TTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACAT > 1:2476865/1‑91 TTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACAT < 1:2183270/91‑1 AGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATAC < 1:2953541/91‑1 AGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATAC > 1:687316/1‑91 AGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATAC < 1:646929/91‑1 GTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACC > 1:3086163/1‑91 GTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACC < 1:3045665/91‑1 TTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCG < 1:2692187/91‑1 GTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCT > 1:342702/1‑91 GTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCT > 1:342732/1‑91 AGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAA > 1:3879252/1‑91 AACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAAT > 1:2983789/1‑91 ATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCT > 1:3704421/1‑91 TTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATA > 1:835064/1‑91 GTATGTGAAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACT > 1:1385882/1‑91 GAAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTG > 1:40738/1‑91 AAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGT > 1:114773/1‑91 AACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTG > 1:2181044/1‑91 AACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTG > 1:715028/1‑91 AACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTG > 1:3711760/1‑91 AACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTG > 1:2007354/1‑91 AACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTG > 1:1770904/1‑91 ACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGT > 1:1243956/1‑91 ACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGT > 1:2742092/1‑91 TAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCG > 1:868502/1‑91 GAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGA > 1:3299681/1‑91 TTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTT < 1:2570197/91‑1 TCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTT < 1:240171/91‑1 TCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTT < 1:240004/91‑1 CACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTGGATTTCTTATCTTTATATACAACTAATTTGTGTTTCGGCGATTTTT < 1:3307229/91‑1 CACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTT > 1:2848357/1‑91 CACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTT > 1:2847419/1‑91 ACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT < 1:678123/91‑1 CATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTC > 1:811587/1‑91 TACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAA > 1:2029385/1‑91 TACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAA > 1:2613056/1‑91 TACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAA > 1:4026588/1‑91 CCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACT > 1:4082484/1‑91 CCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACT < 1:2102415/91‑1 CGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTG > 1:3144787/1‑91 GCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGA < 1:3339409/91‑1 GCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGA < 1:656125/91‑1 GCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGA < 1:3339312/91‑1 GCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTCCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGA > 1:3289776/1‑91 GCTAAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGA < 1:3339296/91‑1 CTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGAC < 1:71186/91‑1 CTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGAC > 1:1721972/1‑91 AATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1747221‑1747122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGAC > USA300TCH1516_ALE/1747161‑1747248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |