| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1759667 = | 91 (0.930) | 6 (0.070) | 4/132 | NT | 8.0% | intergenic (‑374/+100) | USA300HOU_RS08780/USA300HOU_RS08785 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1759723 = | 62 (0.760) | intergenic (‑430/+44) | USA300HOU_RS08780/USA300HOU_RS08785 | hypothetical protein/hypothetical protein | |||||
AATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1759768‑1759667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTA > USA300TCH1516_ALE/1759723‑1759811 AATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACA > 1:573737/1‑91AATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACA > 1:573821/1‑91 ATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACAT > 1:102590/1‑91 ATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACAT < 1:898183/91‑1 ATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACAT > 1:3579398/1‑91 TAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATT < 1:2395342/91‑1 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA > 1:330914/1‑91 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA > 1:761704/1‑91 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 1:1837872/91‑1 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 1:211613/91‑1 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 1:2242797/91‑1 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 1:383355/91‑1 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 1:3785495/91‑1 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 1:3785470/91‑1 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 1:7753/91‑1 TCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGT < 1:4109572/91‑1 TCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGT < 1:1459984/91‑1 TCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGT < 1:145630/91‑1 TCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGT < 1:3559130/91‑1 TCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGT > 1:749934/1‑91 CTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTT > 1:2591485/1‑91 TGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTT < 1:400820/91‑1 TGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTT > 1:761035/1‑91 GTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT > 1:2320663/1‑91 CCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTA > 1:2018047/1‑91 AATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTA < 1:1233614/91‑1 ATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAT > 1:2255385/1‑91 GGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACT > 1:2862392/1‑91 GGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACT > 1:481390/1‑91 GTTAAAAAATTCTAAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACG > 1:2907209/1‑91 ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCG < 1:3110006/91‑1 ATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTA < 1:1996068/91‑1 TTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTAT < 1:475989/91‑1 TTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACAATTACTTACGCCCAAATGCGTTAGATAAAAATCGTAT < 1:2661655/91‑1 AGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCA > 1:3782182/1‑91 GGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAG > 1:3521176/1‑91 GAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGC < 1:2736926/91‑1 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG > 1:865176/1‑91 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG < 1:1111794/91‑1 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG < 1:2522375/91‑1 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG < 1:1255143/91‑1 AGTTTTAGTTTGTTTTCAAGCACGGATACTACGTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG < 1:3532258/91‑1 TTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTA < 1:3261937/91‑1 AATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1759768‑1759667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTA > USA300TCH1516_ALE/1759723‑1759811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |