BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1759667 =	91 (0.930)	6 (0.070)	4/132	NT	8.0%	intergenic (‑374/+100)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1759723 =	62 (0.760)	6 (0.070)	4/132	NT	8.0%	intergenic (‑430/+44)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein

Only 100 of 120 total aligned reads displayed.

TTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGC  >  USA300TCH1516_ALE/1759633‑1759813

tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                                            <  1:1726204/91‑1 (MQ=255)

tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                                            <  1:377631/91‑1 (MQ=255)

 ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                                           <  1:2726682/91‑1 (MQ=255)

 ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                                           <  1:2721837/91‑1 (MQ=255)

 ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                                           <  1:2830502/91‑1 (MQ=255)

 ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                                           <  1:1486360/91‑1 (MQ=255)

  tCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgt                                                                                          <  1:1808779/91‑1 (MQ=255)

    aaTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgttt                                                                                        <  1:440319/91‑1 (MQ=255)

      tttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgt                                                                                      <  1:2767205/91‑1 (MQ=255)

       ttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                                     <  1:628165/91‑1 (MQ=255)

       ttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                                     <  1:3201433/91‑1 (MQ=255)

       ttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                                     <  1:3513143/91‑1 (MQ=255)

          aCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTc                                                                                  <  1:766895/91‑1 (MQ=255)

          aCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTc                                                                                  >  1:335157/1‑91 (MQ=255)

          aCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTCGTTTTc                                                                                  <  1:3226273/91‑1 (MQ=255)

           cAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCa                                                                                 >  1:2959510/1‑91 (MQ=255)

           cAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCa                                                                                 >  1:1514902/1‑91 (MQ=255)

            aaTTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCaa                                                                                <  1:337484/91‑1 (MQ=255)

               tAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCa                                                                             <  1:1676880/91‑1 (MQ=255)

               tAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCa                                                                             <  1:2824437/91‑1 (MQ=255)

                aaaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCAc                                                                            <  1:1922330/91‑1 (MQ=255)

                 aaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACg                                                                           <  1:608382/91‑1 (MQ=255)

                  aTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACgg                                                                          <  1:2771311/91‑1 (MQ=255)

                   tttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGa                                                                         <  1:2626135/91‑1 (MQ=255)

                    ttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAt                                                                        <  1:3410646/91‑1 (MQ=255)

                     tATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAta                                                                       <  1:1409391/91‑1 (MQ=255)

                      aTTCTGCATAACAATACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTTGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                                                                      <  1:3742773/91‑1 (MQ=255)

                      aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGTAtac                                                                      >  1:489927/1‑91 (MQ=255)

                      aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                                                                      <  1:1249285/91‑1 (MQ=255)

                      aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                                                                      >  1:490604/1‑91 (MQ=255)

                       ttCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtact                                                                     <  1:3103219/91‑1 (MQ=255)

                         cTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtactac                                                                   <  1:620163/91‑1 (MQ=255)

                          tGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATactact                                                                  >  1:2027458/1‑91 (MQ=255)

                          tGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATactact                                                                  >  1:2027442/1‑91 (MQ=255)

                              tAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgat                                                              <  1:3650379/91‑1 (MQ=255)

                               aaCAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgatg                                                             <  1:1853553/91‑1 (MQ=255)

                                  AAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAAc                                                          >  1:2320663‑M1/1‑91 (MQ=255)

                                   AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                                         <  1:400820‑M1/91‑1 (MQ=255)

                                   AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                                         >  1:761035‑M1/1‑91 (MQ=255)

                                     ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                                       <  1:1459984‑M1/91‑1 (MQ=255)

                                     ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                                       <  1:145630‑M1/91‑1 (MQ=255)

                                     ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                                       >  1:749934‑M1/1‑91 (MQ=255)

                                     ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                                       <  1:4109572‑M1/91‑1 (MQ=255)

                                        cctaatgtggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    >  1:2018047‑M2/51‑91 (MQ=255)

                                        CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    <  1:2242797‑M1/91‑1 (MQ=255)

                                        CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    <  1:1837872‑M1/91‑1 (MQ=255)

                                        CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    <  1:3785495‑M1/91‑1 (MQ=255)

                                        CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    <  1:383355‑M1/91‑1 (MQ=255)

                                        CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    <  1:211613‑M1/91‑1 (MQ=255)

                                          TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                                  >  1:761704‑M1/1‑91 (MQ=255)

                                          TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                                  >  1:330914‑M1/1‑91 (MQ=255)

                                           aatgtggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattacta                                                 <  1:1233614‑M2/44‑1 (MQ=255)

                                           AATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattacta                                                 <  1:2395342‑M1/91‑1 (MQ=255)

                                            atgtggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                                >  1:2255385‑M2/47‑91 (MQ=255)

                                            ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                                >  1:3579398‑M1/1‑91 (MQ=255)

                                            ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                                <  1:898183‑M1/91‑1 (MQ=255)

                                            ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                                >  1:102590‑M1/1‑91 (MQ=255)

                                             TGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatt                                               >  1:573821‑M1/1‑91 (MQ=255)

                                             TGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatt                                               >  1:573737‑M1/1‑91 (MQ=255)

                                                ggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactattact                                            >  1:481390‑M2/43‑91 (MQ=255)

                                                ggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactattact                                            >  1:2862392‑M2/43‑91 (MQ=255)

                                                aCTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactattact                                            >  1:198469/1‑91 (MQ=255)

                                                 cTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttactt                                           <  1:1842232/91‑1 (MQ=255)

                                                   aGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttacttac                                         <  1:2246853/91‑1 (MQ=255)

                                                   aGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttacttac                                         <  1:3896567/91‑1 (MQ=255)

                                                    gTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACg                                        >  1:354811/1‑91 (MQ=255)

                                                     tttAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGc                                       <  1:3400769/91‑1 (MQ=255)

                                                     tttAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGc                                       <  1:2468872/91‑1 (MQ=255)

                                                        aGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCa                                    <  1:796447/91‑1 (MQ=255)

                                                        aGAATTTTTCAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCa                                    <  1:227173/91‑1 (MQ=255)

                                                          aaTTTTTTAACTGGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCaaa                                  >  1:3203715/1‑91 (MQ=255)

                                                          aaTTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCaaa                                  >  1:3468568/1‑91 (MQ=255)

                                                          aaTTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCaaa                                  <  1:3241949/91‑1 (MQ=255)

                                                           aTTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAAt                                 >  1:1476143/1‑91 (MQ=255)

                                                            ttttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATg                                <  1:2342997/91‑1 (MQ=255)

                                                              ttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCg                              >  1:802145/1‑91 (MQ=255)

                                                               tttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGt                             <  1:3367724/91‑1 (MQ=255)

                                                               tttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGt                             <  1:3806651/91‑1 (MQ=255)

                                                               tttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGt                             <  1:3806492/91‑1 (MQ=255)

                                                                   aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa                         <  1:4059064/91‑1 (MQ=255)

                                                                    cTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt                        >  1:148812/1‑91 (MQ=255)

                                                                    cTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt                        >  1:791000/1‑91 (MQ=255)

                                                                     tAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATa                       >  1:740703/1‑91 (MQ=255)

                                                                     tAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATa                       >  1:1775761/1‑91 (MQ=255)

                                                                           cacaTTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATc                 <  1:456440/91‑1 (MQ=255)

                                                                           cacaTTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATc                 >  1:3889356/1‑91 (MQ=255)

                                                                            acattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCg                <  1:3110006‑M2/77‑1 (MQ=255)

                                                                              attaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTa              <  1:1996068‑M2/79‑1 (MQ=255)

                                                                               ttaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTAt             <  1:475989‑M2/80‑1 (MQ=255)

                                                                               ttaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACAATTACTTACGCCCAAATGCGTTAGATAAAAATCGTAt             <  1:2661655‑M2/80‑1 (MQ=255)

                                                                                 aggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCa           >  1:3782182‑M2/10‑91 (MQ=255)

                                                                                  ggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAg          >  1:3521176‑M2/9‑91 (MQ=255)

                                                                                   gagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgc         <  1:2736926‑M2/84‑1 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        <  1:1255143‑M2/85‑1 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        <  1:2522375‑M2/85‑1 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        >  1:865176‑M2/7‑91 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        <  1:1111794‑M2/85‑1 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACGTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        <  1:3532258‑M2/85‑1 (MQ=255)

                                                                                        ttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTa    <  1:3261937‑M2/89‑1 (MQ=255)

                                                                                          aGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGc  <  1:3283295/91‑1 (MQ=255)

TTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGC  >  USA300TCH1516_ALE/1759633‑1759813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.