| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1789630 = | 83 (0.840) | 9 (0.110) | 6/138 | NT | 11.5% | intergenic (‑111/+59) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase |
| ? | USA300TCH1516_ALE | 1789673 = | 67 (0.790) | intergenic (‑154/+16) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase | |||||
GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1789730‑1789630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtaatgac‑‑tTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTT > USA300TCH1516_ALE/1789673‑1789761 GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTA > 1:54561/1‑91 AAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAA > 1:2008368/1‑91 AAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAA > 1:2434370/1‑91 AGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAG > 1:220677/1‑91 AGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAG > 1:220770/1‑91 GGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGT > 1:1181847/1‑91 GGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGT > 1:1978337/1‑91 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTA > 1:2892976/1‑91 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTA > 1:282252/1‑91 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTA > 1:282153/1‑91 TATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAAT > 1:3379790/1‑91 ATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATG > 1:800444/1‑91 ATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATG < 1:1836980/91‑1 ATAGTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTATGTAATG < 1:3221865/91‑1 TATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGA > 1:582664/1‑91 TATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGA < 1:3670944/91‑1 TATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGA < 1:3586600/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC > 1:686031/1‑91 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 1:4106753/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 1:724364/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 1:726997/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 1:3142291/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 1:2459129/91‑1 TATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGACTATTTTTTATAGTGTAATATTAATCTTCTTCTC > 1:1497140/1‑91 ACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAT > 1:3457395/1‑91 AGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAA > 1:2327719/1‑91 AGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAA > 1:2513256/1‑91 AGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAA > 1:2510686/1‑91 CTTTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCT > 1:773531/1‑91 TTTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTT > 1:1031432/1‑91 TTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTC > 1:2975742/1‑91 TTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTC > 1:627167/1‑91 AAGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGG < 1:402963/91‑1 AGTAATGAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGT < 1:2595412/91‑1 GAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTT < 1:2610145/91‑1 GAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTT > 1:1348764/1‑91 GAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTT > 1:3409743/1‑91 GAC‑‑TTATTTATAGTGTAATATTAATCTTCTTCGCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTT > 1:3409760/1‑91 AC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTT > 1:583967/1‑91 AC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTT > 1:584154/1‑91 AC‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTT < 1:641368/91‑1 C‑‑TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTT > 1:1097915/1‑91 GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1789730‑1789630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtaatgac‑‑tTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTT > USA300TCH1516_ALE/1789673‑1789761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |