BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1789630 =	83 (0.840)	9 (0.110)	6/138	NT	11.5%	intergenic (‑111/+59)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase
*	?	USA300TCH1516_ALE	1789673 =	67 (0.790)	9 (0.110)	6/138	NT	11.5%	intergenic (‑154/+16)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase

Only 100 of 126 total aligned reads displayed.

TTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTT  >  USA300TCH1516_ALE/1789584‑1789761

 ttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttat                                                                                        <  1:3573837/91‑1 (MQ=255)

   gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt                                                                                      >  1:913776/1‑91 (MQ=255)

    aaaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattta                                                                                     >  1:2336121/1‑91 (MQ=255)

     aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                                                                    >  1:2307972/1‑91 (MQ=255)

     aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                                                                    >  1:2308277/1‑91 (MQ=255)

     aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                                                                    >  1:3702723/1‑91 (MQ=255)

      aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                                   >  1:3999322/1‑91 (MQ=255)

      aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                                   >  1:377851/1‑91 (MQ=255)

      aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                                   >  1:742343/1‑91 (MQ=255)

      aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                                   >  1:742270/1‑91 (MQ=255)

         gTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtg                                                                                <  1:3361422/91‑1 (MQ=255)

          ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                               <  1:2425438/91‑1 (MQ=255)

          attacggagaagaagattaatattacactataaataA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                               >  1:3457395‑M1/37‑91 (MQ=255)

            ttCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTaa                                                                             >  1:2614598/1‑91 (MQ=255)

                gagaagaagattaatattacactataaaaaATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata                                                                           >  1:1497140‑M1/31‑91 (MQ=255)

                gTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                                         <  1:2866684/91‑1 (MQ=255)

                gTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                                         <  1:935968/91‑1 (MQ=255)

                gTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                                         <  1:4096059/91‑1 (MQ=255)

                gTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                                         >  1:448621/1‑91 (MQ=255)

                 ttGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTa                                                                        >  1:2947771/1‑91 (MQ=255)

                 ttGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTa                                                                        >  1:2947502/1‑91 (MQ=255)

                 ttGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTa                                                                        >  1:614136/1‑91 (MQ=255)

                 ttGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTa                                                                        >  1:67467/1‑91 (MQ=255)

                  tGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTaa                                                                       >  1:512331/1‑91 (MQ=255)

                  tGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTaa                                                                       <  1:4093989/91‑1 (MQ=255)

                    atttatttATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                                     <  1:3750846/91‑1 (MQ=255)

                    atttatttATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                                     <  1:2299881/91‑1 (MQ=255)

                         tttatCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttctt                                                                >  1:3615205/1‑91 (MQ=255)

                          ttatCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttc                                                               <  1:363393/91‑1 (MQ=255)

                           tatCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                                                              <  1:1993737/91‑1 (MQ=255)

                             tCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTcc                                                            <  1:590441/91‑1 (MQ=255)

                              cTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCg                                                           <  1:2161663/91‑1 (MQ=255)

                               ttttttATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                          >  1:4084480/1‑91 (MQ=255)

                               ttttttATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                          <  1:3026394/91‑1 (MQ=255)

                               ttttttATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                          >  1:513643/1‑91 (MQ=255)

                                tttttATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTa                                                         <  1:2060046/91‑1 (MQ=255)

                                  tttATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt                                                       >  1:1941512/1‑91 (MQ=255)

                                    tataAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTc                                                     <  1:3209375/91‑1 (MQ=255)

                                    acactataaataagtcattactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt                                                       >  1:3457395‑M2/56‑91 (MQ=255)

                                     ataAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                                    >  1:63828/1‑91 (MQ=255)

                                     ataAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                                    >  1:548159/1‑91 (MQ=255)

                                     ataAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                                    >  1:3063575/1‑91 (MQ=255)

                                     ataAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                                    >  1:3997176/1‑91 (MQ=255)

                                     ataAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                                    >  1:3997233/1‑91 (MQ=255)

                                      taAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCgg                                                   >  1:414662/1‑91 (MQ=255)

                                          aaaTA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCttt                                               <  1:462335/91‑1 (MQ=255)

                                                agtcattactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCaa                                           >  1:2510686‑M2/44‑91 (MQ=255)

                                                agtcattactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCaa                                           >  1:2513256‑M2/44‑91 (MQ=255)

                                                 GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                          <  1:4106753‑M1/91‑1 (MQ=255)

                                                 GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                          >  1:686031‑M1/1‑91 (MQ=255)

                                                 GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                          <  1:724364‑M1/91‑1 (MQ=255)

                                                 GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                          <  1:3142291‑M1/91‑1 (MQ=255)

                                                  TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                                         <  1:3670944‑M1/91‑1 (MQ=255)

                                                  TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                                         >  1:582664‑M1/1‑91 (MQ=255)

                                                   CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                                        <  1:1836980‑M1/91‑1 (MQ=255)

                                                   CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                                        >  1:800444‑M1/1‑91 (MQ=255)

                                                    ATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAAtata                                       >  1:3379790‑M1/1‑91 (MQ=255)

                                                      TACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAc                                     >  1:282153‑M1/1‑91 (MQ=255)

                                                       ACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAcc                                    >  1:1181847‑M1/1‑91 (MQ=255)

                                                       ACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAcc                                    >  1:1978337‑M1/1‑91 (MQ=255)

                                                        ctttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACct                                   >  1:773531‑M2/36‑91 (MQ=255)

                                                        CTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCt                                   >  1:220677‑M1/1‑91 (MQ=255)

                                                         tttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACctt                                  >  1:1031432‑M2/35‑91 (MQ=255)

                                                         TTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCtt                                  >  1:2008368‑M1/1‑91 (MQ=255)

                                                         TTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCtt                                  >  1:2434370‑M1/1‑91 (MQ=255)

                                                          ttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttc                                 >  1:2975742‑M2/34‑91 (MQ=255)

                                                          ttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttc                                 >  1:627167‑M2/34‑91 (MQ=255)

                                                          TACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTc                                 >  1:54561‑M1/1‑91 (MQ=255)

                                                            catacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttctt                               >  1:2884661/1‑91 (MQ=255)

                                                            catacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttctt                               >  1:2884638/1‑91 (MQ=255)

                                                               acatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttcttctt                            <  1:1350390/91‑1 (MQ=255)

                                                                catCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCttcttcttc                           <  1:478715/91‑1 (MQ=255)

                                                                 atCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTtcttcttct                          <  1:695739/91‑1 (MQ=255)

                                                                 atCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTtcttcttct                          <  1:2531849/91‑1 (MQ=255)

                                                                  tCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTa                         >  1:427396/1‑91 (MQ=255)

                                                                  tCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTa                         >  1:3392541/1‑91 (MQ=255)

                                                                  tCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTa                         >  1:1395834/1‑91 (MQ=255)

                                                                    aaCGCGTACCTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                       >  1:2089379/1‑91 (MQ=255)

                                                                      cgcgTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACaa                     <  1:870037/91‑1 (MQ=255)

                                                                        cgtacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtc                   >  1:2436962/1‑91 (MQ=255)

                                                                          tacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctc                 >  1:3323878/1‑91 (MQ=255)

                                                                          tacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctc                 <  1:3765505/91‑1 (MQ=255)

                                                                           acgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctct                <  1:2129058/91‑1 (MQ=255)

                                                                            cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc               <  1:1565058/91‑1 (MQ=255)

                                                                            cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc               >  1:2835783/1‑91 (MQ=255)

                                                                            cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc               <  1:2688971/91‑1 (MQ=255)

                                                                             gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa              >  1:3888298/1‑91 (MQ=255)

                                                                             gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa              <  1:1777081/91‑1 (MQ=255)

                                                                               aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg            <  1:166663/91‑1 (MQ=255)

                                                                               aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg            <  1:1517842/91‑1 (MQ=255)

                                                                               aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg            <  1:1517574/91‑1 (MQ=255)

                                                                               aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg            <  1:1517067/91‑1 (MQ=255)

                                                                               aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg            <  1:1282600/91‑1 (MQ=255)

                                                                                aagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAgg           <  1:402963‑M2/80‑1 (MQ=255)

                                                                                 agtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgt          <  1:2595412‑M2/81‑1 (MQ=255)

                                                                                       gactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt    <  1:2610145‑M2/87‑1 (MQ=255)

                                                                                       gactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt    >  1:1348764‑M2/5‑91 (MQ=255)

                                                                                       gactTATTTATAGTGTAATATTAATCTTCTTCGCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt    >  1:3409760‑M2/5‑91 (MQ=255)

                                                                                        actTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgttt   >  1:583967‑M2/4‑91 (MQ=255)

                                                                                         ctTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtttt  >  1:1097915‑M2/3‑91 (MQ=255)

TTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATA‑‑GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTT  >  USA300TCH1516_ALE/1789584‑1789761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.