| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1803618 | 64 (0.650) | 8 (0.090) | 3/142 | NT | 9.6% | coding (250/807 nt) | USA300HOU_RS12765 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1911906 = | 94 (1.080) | coding (28/609 nt) | USA300HOU_RS15290 | hypothetical protein | |||||
TTATTAGGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1803521‑1803618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaataaa‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGAC > USA300TCH1516_ALE/1911906‑1911995 TTATTAGGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTT > 1:1960334/1‑91 TATTAGGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTT > 1:2420468/1‑91 AGGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATA > 1:2123317/1‑91 AGGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATA > 1:2123401/1‑91 GGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAgatc > 1:3018262/1‑87 GGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATAA < 1:256401/91‑1 GGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATAA > 1:1785122/1‑91 GGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATAA < 1:241024/91‑1 ATTAAGTTCGTCATATTTCCAATTTTAAGTGTTGAAAATGTCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑ACGCCACTTATTACGT < 1:481969/91‑1 TTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTA < 1:3860146/91‑1 TTTCCAATTTTAAGTGTTGAAAATGTCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTA < 1:2673545/91‑1 TTCCAATTTTAAGTGTTGAAAATGTCACTTTTAAACTTTCTAGTTTTATCTTTAATAAACATGCCACTTATTACGTATGGCATGTTTATTA < 1:4084695/91‑1 CCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAG < 1:2913015/91‑1 AATTTTGAGTGTTGAAAATGTCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGAT < 1:1751574/91‑1 TTTTGAGTGTTGAAAATGTCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAA < 1:2684444/91‑1 TGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAAC < 1:162169/91‑1 TTAATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAA > 1:3821029/1‑91 TAATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAA < 1:3004049/91‑1 ATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATA > 1:2279244/1‑91 ATAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATA > 1:2192088/1‑91 TAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATAT < 1:1018023/91‑1 TAAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATAT < 1:1018383/91‑1 AAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATG < 1:262782/91‑1 AAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATG > 1:2671778/1‑91 AAA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATG > 1:2477486/1‑91 AA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATGTGA > 1:3211717/1‑91 AA‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGA > 1:865065/1‑91 AA‑ACGCCACTTACTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATGTGA > 1:3211694/1‑91 A‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGAC < 1:3981184/91‑1 TTATTAGGACATATAAATTCATTATTAAGTTCGTCATATTTCCAATTTTGAGTGTTGAAAATGCCACTTTTAAACTTTCTAGTTTTATCTTTAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1803521‑1803618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaataaa‑ACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGAC > USA300TCH1516_ALE/1911906‑1911995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |