BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1803618	64 (0.650)	8 (0.090)	3/142	NT	9.6%	coding (250/807 nt)	USA300HOU_RS12765	hypothetical protein
*	?	USA300TCH1516_ALE	1911906 =	94 (1.080)	8 (0.090)	3/142	NT	9.6%	coding (28/609 nt)	USA300HOU_RS15290	hypothetical protein

Only 100 of 130 total aligned reads displayed.

AATGATTCAAAATACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGACG  >  USA300TCH1516_ALE/1911816‑1911996

aaTGATTCAAAATACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATaaaa                                                                                            <  1:535272/91‑1 (MQ=255)

aaTGATTCAAAATACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATaaaa                                                                                            >  1:2670233/1‑91 (MQ=255)

 aTGATTCAAAATACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAAc                                                                                           <  1:288846/91‑1 (MQ=255)

   gATTCAAAATACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGc                                                                                         >  1:1393505/1‑91 (MQ=255)

    aTTCAAAATACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGcc                                                                                        <  1:2125306/91‑1 (MQ=255)

         aaaTACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACtta                                                                                   >  1:3059584/1‑91 (MQ=255)

         aaaTACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACtta                                                                                   >  1:3059161/1‑91 (MQ=255)

           aTACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACttatt                                                                                 >  1:2098632/1‑91 (MQ=255)

              ccTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACg                                                                              >  1:948908/1‑91 (MQ=255)

               cTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGt                                                                             <  1:1262645/91‑1 (MQ=255)

               attaagttcgtcatatttccaattttaagtgttgaaaatgtcacttttaaactttctagttttatctttaataaaACGCCACTTATTACGt                                                                             <  1:481969‑M2/16‑1 (MQ=255)

                ttCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTa                                                                            <  1:1372483/91‑1 (MQ=255)

                ttCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTa                                                                            <  1:1372362/91‑1 (MQ=255)

                ttCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTa                                                                            <  1:1677077/91‑1 (MQ=255)

                ttCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTa                                                                            <  1:1677448/91‑1 (MQ=255)

                ttCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTa                                                                            >  1:1740909/1‑91 (MQ=255)

                  cGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATg                                                                          >  1:1869762/1‑91 (MQ=255)

                   ggTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATgg                                                                         <  1:1376564/91‑1 (MQ=255)

                       aTTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATg                                                                     <  1:2789512/91‑1 (MQ=37)

                       aTTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATg                                                                     >  1:1374915/1‑91 (MQ=37)

                        tttGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGt                                                                    <  1:3790113/91‑1 (MQ=35)

                        tttGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGt                                                                    >  1:3099510/1‑91 (MQ=35)

                          tGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGttt                                                                  <  1:3608541/91‑1 (MQ=34)

                             aGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTttatt                                                               >  1:162553/1‑91 (MQ=34)

                              tttccaattttaagtgttgaaaatgtcacttttaaactttctagttttatctttaataaaACGCCACTTATTACGTATGGCATGTttatta                                                              <  1:2673545‑M2/31‑1 (MQ=255)

                              gCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTttatta                                                              <  1:1154976/91‑1 (MQ=34)

                              gCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTttatta                                                              >  1:83888/1‑91 (MQ=34)

                              gCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTttatta                                                              >  1:214732/1‑91 (MQ=34)

                                tGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTaaa                                                            <  1:1739609/91‑1 (MQ=34)

                                tGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTaaa                                                            <  1:2192753/91‑1 (MQ=34)

                                 ccaattttgagtgttgaaaatgccacttttaaactttctagttttatctttaataaaACGCCACTTATTACGTATGGCATGTTTATTAAAg                                                           <  1:2913015‑M2/34‑1 (MQ=255)

                                  aTGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGa                                                          <  1:3580331/91‑1 (MQ=34)

                                  aTGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGa                                                          >  1:1010440/1‑91 (MQ=34)

                                   tGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGAt                                                         >  1:762910/1‑91 (MQ=34)

                                   aattttgagtgttgaaaatgtcacttttaaactttctagttttatctttaataaaACGCCACTTATTACGTATGGCATGTTTATTAAAGAt                                                         <  1:1751574‑M2/36‑1 (MQ=255)

                                    gCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATa                                                        >  1:2430829/1‑91 (MQ=34)

                                    gCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATa                                                        >  1:2314951/1‑91 (MQ=34)

                                     cAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATaa                                                       >  1:3528111/1‑91 (MQ=34)

                                       ggTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATaaaa                                                     >  1:731405/1‑91 (MQ=34)

                                        gTTATGGTAGTGAGCAAAGCTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAAc                                                    <  1:2943072/91‑1 (MQ=21)

                                         ttATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACt                                                   <  1:161059/91‑1 (MQ=33)

                                         ttATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACt                                                   >  1:1615828/1‑91 (MQ=34)

                                           aTGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAg                                                 >  1:1608956/1‑91 (MQ=34)

                                           aTGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAg                                                 >  1:3757948/1‑91 (MQ=34)

                                            tGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGa                                                <  1:2490137/91‑1 (MQ=34)

                                            tGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGa                                                <  1:3038355/91‑1 (MQ=34)

                                            tGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGa                                                <  1:3971777/91‑1 (MQ=34)

                                             ggTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGaa                                               >  1:2456400/1‑91 (MQ=34)

                                             ggTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGaa                                               >  1:408958/1‑91 (MQ=34)

                                              gTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGaaa                                              >  1:3054513/1‑91 (MQ=34)

                                               tAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAg                                             <  1:388019/91‑1 (MQ=34)

                                               tAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAg                                             <  1:387925/91‑1 (MQ=33)

                                                 gTGAGCAAAACTATATGGCCATTATAGATGATTTTAATATAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGtt                                           <  1:2993070/91‑1 (MQ=18)

                                                  tGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGACATGTTTATTAAAGATAAAACTAGAAAGttt                                          <  1:3741426/91‑1 (MQ=21)

                                                  tGAACAAAACTATACGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGTCATGTTTATTAAAGATAAAACTAGAAAGttt                                          <  1:3741523/91‑1 (MQ=255)

                                                    aGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTaa                                        <  1:746877/91‑1 (MQ=34)

                                                    aGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTaa                                        >  1:3824231/1‑91 (MQ=34)

                                                    aGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTaa                                        <  1:414052/91‑1 (MQ=34)

                                                      cAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTaaaa                                      >  1:3137390/1‑91 (MQ=34)

                                                       aaaaCTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAg                                     >  1:3428658/1‑91 (MQ=34)

                                                       aaaaCTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAg                                     >  1:3428704/1‑91 (MQ=34)

                                                        aaaCTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGt                                    >  1:3139494/1‑91 (MQ=34)

                                                          aCTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGa                                  <  1:317480/91‑1 (MQ=34)

                                                          aCTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGa                                  <  1:861538/91‑1 (MQ=34)

                                                          aCTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGa                                  >  1:2735368/1‑91 (MQ=34)

                                                           cTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGAc                                 <  1:346344/91‑1 (MQ=34)

                                                           cTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGAc                                 <  1:347944/91‑1 (MQ=34)

                                                            tataTGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACa                                <  1:3447422/91‑1 (MQ=34)

                                                            tataTGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACa                                <  1:3574187/91‑1 (MQ=34)

                                                             atatGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACAt                               >  1:274306/1‑91 (MQ=34)

                                                              tatGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACAtt                              >  1:1764471/1‑91 (MQ=34)

                                                              tatGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACAtt                              >  1:1764412/1‑91 (MQ=34)

                                                                tGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACAtttt                            >  1:435647/1‑91 (MQ=34)

                                                                  gCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCa                          >  1:1823174/1‑91 (MQ=33)

                                                                        ataGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTc                    <  1:1475059/91‑1 (MQ=31)

                                                                         taGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCa                   >  1:2717208/1‑91 (MQ=32)

                                                                          aGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCaa                  >  1:3057887/1‑91 (MQ=33)

                                                                          aGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCaa                  <  1:614806/91‑1 (MQ=33)

                                                                           gatgctTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCaaa                 >  1:3279189/1‑91 (MQ=21)

                                                                           gatgatTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCaaa                 <  1:2867602/91‑1 (MQ=34)

                                                                           gatgatTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCaaa                 >  1:3386460/1‑91 (MQ=34)

                                                                             tgatTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAAt               <  1:1936170/91‑1 (MQ=34)

                                                                             tgatTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAAt               <  1:972585/91‑1 (MQ=34)

                                                                              gatTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAAtt              <  1:2588066/91‑1 (MQ=34)

                                                                              gatTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAAtt              <  1:957334/91‑1 (MQ=34)

                                                                               atTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTg             <  1:2942511/91‑1 (MQ=34)

                                                                                ttttAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTgg            <  1:848959/91‑1 (MQ=34)

                                                                                  ttaataaaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGaa          >  1:3821029‑M2/9‑91 (MQ=255)

                                                                                   taataaaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGaaa         <  1:3004049‑M2/84‑1 (MQ=255)

                                                                                     ataaaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAata       >  1:2279244‑M2/6‑91 (MQ=255)

                                                                                     ataaaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAata       >  1:2192088‑M2/6‑91 (MQ=255)

                                                                                      taaaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAatat      <  1:1018383‑M2/87‑1 (MQ=255)

                                                                                      taaaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAatat      <  1:1018023‑M2/87‑1 (MQ=255)

                                                                                       aaaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATg     >  1:2671778‑M2/4‑91 (MQ=255)

                                                                                       aaaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATg     >  1:2477486‑M2/4‑91 (MQ=255)

                                                                                        aaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATGTGa    >  1:3211717‑M2/3‑91 (MQ=255)

                                                                                        aaACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGa    >  1:865065‑M2/3‑91 (MQ=255)

                                                                                        aaACGCCACTTACTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATGTGa    >  1:3211694‑M2/3‑91 (MQ=255)

                                                                                         aACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGAc   <  1:3981184‑M2/90‑1 (MQ=255)

                                                                                          aCGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGACg  >  1:3056449/1‑91 (MQ=34)

AATGATTCAAAATACCTTCGGTTATTTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCAACACTCAAAATTGGAAATATGACG  >  USA300TCH1516_ALE/1911816‑1911996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.