| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1822873 | 81 (0.820) | 9 (0.100) | 6/142 | NT | 10.5% | intergenic (+194/+52) | USA300HOU_RS09070/ackA | Putative universal stress protein/Acetate kinase |
| ? | USA300TCH1516_ALE | = 1822899 | 82 (0.940) | intergenic (+220/+26) | USA300HOU_RS09070/ackA | Putative universal stress protein/Acetate kinase | |||||
TAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1822775‑1822873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgtctaTCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAA < USA300TCH1516_ALE/1822899‑1822811 TAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAA < 1:255986/91‑1 AATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAA < 1:214249/91‑1 AATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAA < 1:242374/91‑1 AATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAA > 1:2584213/1‑91 TGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGC < 1:2427720/91‑1 GTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCG < 1:330346/91‑1 GTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCG < 1:3096350/91‑1 GTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGCTAATTTTCAAACAATACAAAAAGCG > 1:3869111/1‑91 GTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGATAATTTTCAAACAATACAAAAAGCG > 1:3869176/1‑91 TTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCT < 1:1792589/91‑1 TTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCT > 1:2456555/1‑91 TTCATAATCTTCTTCGACTACTTAATTCTTTAACATACTCGTGAAACGAGACATTACACCAGTTAATTTTCAAACAATACAAAAAGCGTCT > 1:3313845/1‑91 TTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAGTTATATGTAGGA < 1:3186088/91‑1 TTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTA < 1:3099618/91‑1 TAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAAGAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAG < 1:3316064/91‑1 TAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAG < 1:732360/91‑1 TAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAG < 1:180695/91‑1 GATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACG < 1:3986212/91‑1 GATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACG < 1:3987073/91‑1 ATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGC < 1:1613172/91‑1 TTTCAAACAATACAAAAAGCGTCTACCTC‑‑CTACATATAATTGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGT > 1:1752203/1‑91 AAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAAT > 1:488391/1‑91 GCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATAT > 1:3277020/1‑91 CGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATC < 1:2202676/91‑1 GTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCT < 1:1940153/91‑1 TCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTT > 1:589303/1‑91 CTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTA < 1:2216453/91‑1 CTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTA < 1:1404146/91‑1 TATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAA < 1:2374487/91‑1 TATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAA < 1:2216423/91‑1 TAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1822775‑1822873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgtctaTCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAA < USA300TCH1516_ALE/1822899‑1822811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |