BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1822873	81 (0.820)	9 (0.100)	6/142	NT	10.5%	intergenic (+194/+52)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase
*	?	USA300TCH1516_ALE	= 1822899	82 (0.940)	9 (0.100)	6/142	NT	10.5%	intergenic (+220/+26)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase

Only 100 of 126 total aligned reads displayed.

TTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATA  >  USA300TCH1516_ALE/1822811‑1822988

ttAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAta                                                                                         <  1:2216423‑M2/91‑3 (MQ=255)

ttAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAta                                                                                         <  1:2374487‑M2/91‑3 (MQ=255)

 tAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtag                                                                                        <  1:2216453‑M2/91‑4 (MQ=255)

 tAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtag                                                                                        <  1:1404146‑M2/91‑4 (MQ=255)

   aGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagac                                                                                      <  1:1940153‑M2/91‑6 (MQ=255)

     atatTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgc                                                                                    >  1:3277020‑M2/1‑84 (MQ=255)

       atTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctt                                                                                  >  1:488391‑M2/1‑82 (MQ=255)

          cGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAat                                                                               <  1:1769970/91‑1 (MQ=255)

          cGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAat                                                                               >  1:1449052/1‑91 (MQ=255)

             tatgacattcggtggtttaaaataatttttaaataaatattAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                            >  1:2671650‑M1/42‑91 (MQ=255)

             gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                            <  1:2908484/91‑1 (MQ=255)

             gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                            <  1:4018082/91‑1 (MQ=255)

             gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                            <  1:2907730/91‑1 (MQ=255)

             gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                            <  1:4018362/91‑1 (MQ=255)

                aaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttat                                                                         <  1:348610/91‑1 (MQ=255)

                aaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttat                                                                         <  1:3316759/91‑1 (MQ=255)

                  gagaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATatttattt                                                                       >  1:3749765/1‑91 (MQ=255)

                   agaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATAtttattta                                                                      >  1:2105257/1‑91 (MQ=255)

                    gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                     <  1:916334/91‑1 (MQ=255)

                    gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                     <  1:1178634/91‑1 (MQ=255)

                     tcggtggtttaaaataatttttaaataaatattAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaa                                                                    >  1:2812309‑M1/34‑91 (MQ=255)

                     aCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaa                                                                    >  1:1308390/1‑91 (MQ=255)

                     aCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaa                                                                    >  1:865271/1‑91 (MQ=255)

                     aCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACAATTATATGTAG‑‑GAGGtagacgctttttgtattgtttgaaa                                                                  >  1:1752203‑M2/1‑66 (MQ=255)

                     aCATTACAATAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaa                                                                    >  1:1376458/1‑91 (MQ=255)

                      cATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaaa                                                                   <  1:2909977/91‑1 (MQ=255)

                         tACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAatt                                                                >  1:679473/1‑91 (MQ=255)

                          acacTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAatta                                                               >  1:1362307/1‑91 (MQ=255)

                                gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                         >  1:304506/1‑91 (MQ=255)

                                gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                         >  1:2115352/1‑91 (MQ=255)

                                 ttAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaaa                                                        >  1:1241585/1‑91 (MQ=255)

                                  tAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAac                                                       >  1:3385892/1‑91 (MQ=255)

                                  tAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAac                                                       <  1:2782581/91‑1 (MQ=255)

                                   aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                      <  1:236906/91‑1 (MQ=255)

                                   aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                      <  1:236986/91‑1 (MQ=255)

                                   aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                      <  1:237062/91‑1 (MQ=255)

                                      tttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccacc                                                   <  1:4133028/91‑1 (MQ=255)

                                      tttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccacc                                                   <  1:3522038/91‑1 (MQ=255)

                                        tCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGa                                                 <  1:3685160/91‑1 (MQ=255)

                                         cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                >  1:2392391/1‑91 (MQ=255)

                                         cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                >  1:3174655/1‑91 (MQ=255)

                                         cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                >  1:3175411/1‑91 (MQ=255)

                                         cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                >  1:1488522/1‑91 (MQ=255)

                                            aCAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGt                                             >  1:521922/1‑91 (MQ=255)

                                             cAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTc                                            <  1:3445763/91‑1 (MQ=255)

                                             cAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTc                                            >  1:2208622/1‑91 (MQ=255)

                                              aaTACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCa                                           >  1:1053279/1‑91 (MQ=255)

                                                 aCAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATaa                                        <  1:955697/91‑1 (MQ=255)

                                                  cAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAAc                                       >  1:1895911/1‑91 (MQ=255)

                                                   aaaaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAACTTATTTTAAACCACCGAATGTCATAACa                                      >  1:516793/1‑91 (MQ=255)

                                                    aaaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACAt                                     >  1:3436638/1‑91 (MQ=255)

                                                     aaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATc                                    <  1:3112958/91‑1 (MQ=255)

                                                     aaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATc                                    >  1:729825/1‑91 (MQ=255)

                                                        gCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatat                                 <  1:1613172‑M2/91‑59 (MQ=255)

                                                        GCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACg                                 <  1:3106286‑M1/91‑1 (MQ=255)

                                                         cGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatc                                <  1:3987073‑M2/91‑60 (MQ=255)

                                                         cGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatc                                <  1:3986212‑M2/91‑60 (MQ=255)

                                                         CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                >  1:711680‑M1/1‑91 (MQ=255)

                                                         CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                >  1:895373‑M1/1‑91 (MQ=255)

                                                         CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                >  1:2490121‑M1/1‑91 (MQ=255)

                                                         CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                >  1:1886542‑M1/1‑91 (MQ=255)

                                                         CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                >  1:1886570‑M1/1‑91 (MQ=255)

                                                         CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATAATTTTAAACCACCGAATGTCATAACATCACgg                                <  1:3529812‑M1/91‑1 (MQ=255)

                                                           TCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGc                              >  1:1454968‑M1/1‑91 (MQ=255)

                                                            cTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatctta                             <  1:732360‑M2/91‑63 (MQ=255)

                                                            cTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatctta                             <  1:180695‑M2/91‑63 (MQ=255)

                                                            cTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattctttgaaaattaactagtgtaatgtctcttttcacgaatatctta                             <  1:3316064‑M2/91‑63 (MQ=255)

                                                            CTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                             <  1:2505454‑M1/91‑1 (MQ=255)

                                                              ACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                           <  1:3365343‑M1/91‑1 (MQ=255)

                                                              ACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                           >  1:2233534‑M1/1‑91 (MQ=255)

                                                                ctcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCa                         <  1:291452/91‑1 (MQ=255)

                                                                ctcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATCATTTTAAACCACCGAATGTCATAACATCACGGGCAATCa                         >  1:2049319/1‑91 (MQ=255)

                                                                 tcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCAt                        >  1:2426314/1‑91 (MQ=255)

                                                                 tcctACATATAACTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaa                        <  1:3186088‑M2/91‑68 (MQ=255)

                                                                   ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                      <  1:3019616/91‑1 (MQ=255)

                                                                   ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                      >  1:2827351/1‑91 (MQ=255)

                                                                   ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                      <  1:31163/91‑1 (MQ=255)

                                                                   ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                      <  1:3765094/91‑1 (MQ=255)

                                                                   ctACATATAATTATAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                      >  1:3177839/1‑91 (MQ=255)

                                                                    tACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACt                     <  1:1678754/91‑1 (MQ=255)

                                                                    tACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACt                     <  1:1679304/91‑1 (MQ=255)

                                                                     aCATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACtt                    <  1:2882383/91‑1 (MQ=255)

                                                                      cATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACttt                   >  1:2834019/1‑91 (MQ=255)

                                                                        tataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttct                 <  1:1091450/91‑1 (MQ=255)

                                                                         ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                <  1:806793/91‑1 (MQ=255)

                                                                         ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                <  1:3147531/91‑1 (MQ=255)

                                                                          taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc               >  1:1371075/1‑91 (MQ=255)

                                                                          taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc               <  1:511092/91‑1 (MQ=255)

                                                                          taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc               <  1:511312/91‑1 (MQ=255)

                                                                          taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc               <  1:3553618/91‑1 (MQ=255)

                                                                            aTTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt             >  1:1810937/1‑91 (MQ=255)

                                                                            aTTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt             >  1:4136225/1‑91 (MQ=255)

                                                                            aTTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt             >  1:3793916/1‑91 (MQ=255)

                                                                               gTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg          >  1:2631926/1‑91 (MQ=255)

                                                                               gTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg          >  1:4121433/1‑91 (MQ=255)

                                                                                tAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGt         >  1:617088/1‑91 (MQ=255)

                                                                                   cGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTgg      <  1:3082904/91‑1 (MQ=255)

                                                                                     gagaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGaa    >  1:2645409/1‑91 (MQ=255)

                                                                                      agaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAAt   >  1:699839/1‑91 (MQ=255)

                                                                                       gaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATa  >  1:1299405/1‑91 (MQ=255)

TTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATA  >  USA300TCH1516_ALE/1822811‑1822988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.