| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1830989 = | 89 (0.910) | 5 (0.050) | 5/150 | NT | 5.8% | coding (131/1695 nt) | ezrA | Septation ring formation regulator EzrA |
| ? | USA300TCH1516_ALE | 1831014 = | 79 (0.860) | coding (106/1695 nt) | ezrA | Septation ring formation regulator EzrA | |||||
ATATTGATTGCTGTAGGTGTATTATTCTATTTACGTTCAAATAAACGACAAATTATTGAAAAAGCAATCGAACGTAAAAATGAAATTGAGACGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1831083‑1830989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgttCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCAATATAATCACAATTATTGCCAAA > USA300TCH1516_ALE/1831014‑1831102 ATATTGATTGCTGTAGGTGTATTATTCTATTTACGTTCAAATAAACGACAAATTATTGAAAAAGCAATCGAACGTAAAAATGAAATTGAGA > 1:32391/1‑91ATATTGATTGCTGTAGGTGTATTATTCTATTTACGTTCAAATAAACGACAAATTATTGAAAAAGCAATCGAACGTAAAAATGAAATTGAGA > 1:3926628/1‑91 TATTGATTGCTGTAGGTGTATTATTCTATTTACGTTCAAATAAACGACAAATTATTGAAAAAGCAATCGAACGTAAAAATGAAATTGAGAC < 1:199775/91‑1 TGATTGCTGTAGGTGTATTATTCTATTTACGTTCAAATAAACGACAAATTATTGAAAAAGCAATCGAACGTAAAAATGAAATTGAGACGTT > 1:1785816/1‑91 TGATTGCTGTAGGTGTATTATTCTATTTACGTTCAAATAAACGACAAATTATTGAAAAAGCAATCGAACGTAAAAATGAAATTGAGACGTT < 1:4112509/91‑1 ATTTACGTTCAAATAAACGACAAATTATTGAAAAAGCAATCGAACGTAAAAATGAAATTGAGACGTTCGATTGCTTTTTCAATAATTTGTC > 1:2438991/1‑91 CAATCGAACGTAAAAATGAAATTGAGACGTTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAG > 1:402158/1‑91 GAACGTAAAAATGAAATTGAGACGTTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATC > 1:3798570/1‑91 AACGTAAAAATGAAATTGAGACGTTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCA > 1:1974835/1‑91 TAAAAATGAAATTGAGACGTTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCAATAT > 1:1312459/1‑91 ACGTTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCAATATAATCACAATTATTGCC > 1:2624007/1‑91 ACGTTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCAATATAATCACAATTATTGCC > 1:2628127/1‑91 ACGTTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCAATATAATCACAATTATTGCC < 1:365664/91‑1 GTTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCAATATAATCACAATTATTGCCAA > 1:1593252/1‑91 TTCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCAATATAATCACAATTATTGCCAAA > 1:3715547/1‑91 ATATTGATTGCTGTAGGTGTATTATTCTATTTACGTTCAAATAAACGACAAATTATTGAAAAAGCAATCGAACGTAAAAATGAAATTGAGACGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1831083‑1830989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgttCGATTGCTTTTTCAATAATTTGTCGTTTATTTGAACGTAAATAGAATAATACACCTACAGCAATCAATATAATCACAATTATTGCCAAA > USA300TCH1516_ALE/1831014‑1831102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |