| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1834059 = | 78 (0.790) | 7 (0.080) | 6/138 | NT | 10.1% | intergenic (+8/‑106) | osmC/USA300HOU_RS09140 | Peroxiredoxin OsmC/Soluble hydrogenase 42 kDa subunit |
| ? | USA300TCH1516_ALE | 1834098 = | 58 (0.680) | intergenic (+47/‑67) | osmC/USA300HOU_RS09140 | Peroxiredoxin OsmC/Soluble hydrogenase 42 kDa subunit | |||||
TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1834159‑1834059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT > USA300TCH1516_ALE/1834098‑1834187 TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAAC > 1:2627753/1‑91TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAAC > 1:1652117/1‑91TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAAC > 1:18069/1‑91TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAAC > 1:3443523/1‑91 GCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACG > 1:429284/1‑91 GCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACG > 1:316619/1‑91 CCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGT > 1:3666760/1‑91 CCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGT > 1:1657182/1‑91 CCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGT > 1:3238484/1‑91 CTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTT < 1:2282651/91‑1 TCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTA > 1:182645/1‑91 CCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTAT < 1:3079794/91‑1 CTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATC > 1:2849845/1‑91 ATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCAC < 1:1075776/91‑1 ATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCAC < 1:2969219/91‑1 ATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCAC > 1:3480641/1‑91 ATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCAC > 1:4026643/1‑91 ATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCAC > 1:771683/1‑91 TAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACT < 1:1810861/91‑1 AAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT > 1:1636309/1‑91 AAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT > 1:2450141/1‑91 AAGTGATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTT > 1:90436/1‑91 AGTGATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTA > 1:236796/1‑91 GTGATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTAT > 1:2831050/1‑91 GTGATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTAT > 1:152628/1‑91 TGATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATA > 1:3036626/1‑91 ATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGG > 1:103527/1‑91 TAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGA > 1:982607/1‑91 CGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATC < 1:2016229/91‑1 GTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCA < 1:2791302/91‑1 GTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCA < 1:70270/91‑1 GTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCA > 1:3318557/1‑91 TTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAA > 1:133999/1‑91 atcgCTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACC < 1:3737469/87‑1 agCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACC < 1:2658409/89‑1 ATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTGTCATCAACC > 1:3722780/1‑91 ATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACC < 1:2476997/91‑1 ATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACC < 1:2957088/91‑1 CACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGT < 1:3786766/91‑1 ACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTT > 1:1381576/1‑91 ACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTT > 1:1381439/1‑91 ACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTT > 1:1381176/1‑91 ACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTT < 1:680040/91‑1 ACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTT < 1:680449/91‑1 ACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTT > 1:2465549/1‑91 CTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTG < 1:1172162/91‑1 TTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT > 1:2159240/1‑91 TTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT > 1:986085/1‑91 TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1834159‑1834059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT > USA300TCH1516_ALE/1834098‑1834187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |