BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1834059 =	78 (0.790)	7 (0.080)	6/138	NT	10.1%	intergenic (+8/‑106)	osmC/USA300HOU_RS09140	Peroxiredoxin OsmC/Soluble hydrogenase 42 kDa subunit
*	?	USA300TCH1516_ALE	1834098 =	58 (0.680)	7 (0.080)	6/138	NT	10.1%	intergenic (+47/‑67)	osmC/USA300HOU_RS09140	Peroxiredoxin OsmC/Soluble hydrogenase 42 kDa subunit

Only 100 of 120 total aligned reads displayed.

TAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT  >  USA300TCH1516_ALE/1834009‑1834187

taatGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACtttt                                                                                          >  1:3077518/1‑91 (MQ=255)

taatGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACtttt                                                                                          >  1:3496151/1‑91 (MQ=255)

  atGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACtttttt                                                                                        >  1:1356159/1‑91 (MQ=255)

  atGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACtttttt                                                                                        >  1:4119198/1‑91 (MQ=255)

    gtgGACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAg                                                                                      >  1:972951/1‑91 (MQ=255)

     tgGACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAgg                                                                                     <  1:876945/91‑1 (MQ=255)

      ggACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGc                                                                                    <  1:585922/91‑1 (MQ=255)

        aCATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCtt                                                                                  <  1:2737215/91‑1 (MQ=255)

        aCATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCtt                                                                                  <  1:2736794/91‑1 (MQ=255)

        aCATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCtt                                                                                  <  1:692609/91‑1 (MQ=255)

         cATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCttt                                                                                 <  1:3041646/91‑1 (MQ=255)

         cATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCttt                                                                                 <  1:3400752/91‑1 (MQ=255)

         cATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCttt                                                                                 <  1:3607717/91‑1 (MQ=255)

          aTAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCtttt                                                                                <  1:1346288/91‑1 (MQ=255)

           tAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTa                                                                               >  1:617610/1‑91 (MQ=255)

                aTCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAAttt                                                                          <  1:919438/91‑1 (MQ=255)

                aTCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAAttt                                                                          <  1:1836013/91‑1 (MQ=255)

                  cTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTc                                                                        <  1:1605326/91‑1 (MQ=255)

                   tATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCa                                                                       <  1:1620792/91‑1 (MQ=255)

                   tATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCa                                                                       >  1:1681718/1‑91 (MQ=255)

                    aTCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAg                                                                      <  1:4019214/91‑1 (MQ=255)

                    aTCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAg                                                                      <  1:3104757/91‑1 (MQ=255)

                    aTCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAg                                                                      <  1:941874/91‑1 (MQ=255)

                     tCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGa                                                                     >  1:167953/1‑91 (MQ=255)

                        catcatTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCTGaaaa                                                                  <  1:854245/91‑1 (MQ=255)

                         atcatTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAAt                                                                 <  1:1379853/91‑1 (MQ=255)

                             ttCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGc                                                             <  1:3015442/91‑1 (MQ=255)

                             ttCAGGCCAAATAAAATCGTTAAGGGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGc                                                             <  1:4098770/91‑1 (MQ=255)

                                 ggCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTaaa                                                         >  1:703037/1‑91 (MQ=255)

                                 ggCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTaaa                                                         <  1:3479971/91‑1 (MQ=255)

                                 ggCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTaaa                                                         <  1:599107/91‑1 (MQ=255)

                                  gCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTaaaa                                                        <  1:3874984/91‑1 (MQ=255)

                                   ccAAATAGAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAAt                                                       <  1:2063834/91‑1 (MQ=255)

                                   ccAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAAt                                                       <  1:2062719/91‑1 (MQ=255)

                                   ccAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAAt                                                       <  1:1042647/91‑1 (MQ=255)

                                      aaTAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGt                                                    >  1:2231144/1‑91 (MQ=255)

                                       aTAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTg                                                   <  1:1970434/91‑1 (MQ=255)

                                       aTAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTg                                                   <  1:3567291/91‑1 (MQ=255)

                                       aTAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTg                                                   >  1:2528207/1‑91 (MQ=255)

                                         aaaaTCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAACTAGTGaa                                                 >  1:2068074/1‑91 (MQ=255)

                                         aaaaTCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGaa                                                 >  1:2486658/1‑91 (MQ=255)

                                             tCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCt                                             <  1:2303752/91‑1 (MQ=255)

                                              cGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCtt                                            >  1:1586626/1‑91 (MQ=255)

                                               gTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCtta                                           <  1:2934991/91‑1 (MQ=255)

                                                  aagtgataacgctatattgtcgaacaaacgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttattt                                        >  1:90436‑M2/40‑91 (MQ=255)

                                                  AAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttattt                                        >  1:2450141‑M1/1‑91 (MQ=255)

                                                  AAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttattt                                        >  1:1636309‑M1/1‑91 (MQ=255)

                                                   agtgataacgctatattgtcgaacaaacgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttattta                                       >  1:236796‑M2/39‑91 (MQ=255)

                                                   AGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttattta                                       <  1:1810861‑M1/91‑1 (MQ=255)

                                                    gtgataacgctatattgtcgaacaaacgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttatttat                                      >  1:152628‑M2/38‑91 (MQ=255)

                                                    GTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttatttat                                      >  1:771683‑M1/1‑91 (MQ=255)

                                                    GTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttatttat                                      <  1:2969219‑M1/91‑1 (MQ=255)

                                                    GTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttatttat                                      <  1:1075776‑M1/91‑1 (MQ=255)

                                                    GTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCttatttat                                      >  1:4026643‑M1/1‑91 (MQ=255)

                                                      GATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATag                                    >  1:2849845‑M1/1‑91 (MQ=255)

                                                       ataacgctatattgtcgaacaaacgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATagg                                   >  1:103527‑M2/35‑91 (MQ=255)

                                                       ATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATagg                                   <  1:3079794‑M1/91‑1 (MQ=255)

                                                        taacgctatattgtcgaacaaacgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATagga                                  >  1:982607‑M2/34‑91 (MQ=255)

                                                        TAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATagga                                  >  1:182645‑M1/1‑91 (MQ=255)

                                                         AACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATaggag                                 <  1:2282651‑M1/91‑1 (MQ=255)

                                                          ACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATaggagg                                >  1:1657182‑M1/1‑91 (MQ=255)

                                                          ACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATaggagg                                >  1:3666760‑M1/1‑91 (MQ=255)

                                                           CGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGc                               >  1:316619‑M1/1‑91 (MQ=255)

                                                           CGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGc                               >  1:429284‑M1/1‑91 (MQ=255)

                                                            GTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCa                              >  1:2627753‑M1/1‑91 (MQ=255)

                                                            GTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCa                              >  1:3443523‑M1/1‑91 (MQ=255)

                                                             tttGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCat                             >  1:3756075/1‑91 (MQ=255)

                                                               tGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCatat                           <  1:864219/91‑1 (MQ=255)

                                                                gTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATTGGTGGCAtata                          >  1:1396178/1‑91 (MQ=255)

                                                                  tCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATaaa                        >  1:372298/1‑91 (MQ=255)

                                                                  tCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATaaa                        <  1:672694/91‑1 (MQ=255)

                                                                  tCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATaaa                        <  1:671585/91‑1 (MQ=255)

                                                                    gACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATg                      <  1:1362125/91‑1 (MQ=255)

                                                                    gACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATg                      <  1:1362190/91‑1 (MQ=255)

                                                                      cAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGta                    >  1:1378208/1‑91 (MQ=255)

                                                                       aaTATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGtat                   <  1:1684922/91‑1 (MQ=255)

                                                                        atatAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGtatt                  <  1:1675039/91‑1 (MQ=255)

                                                                          ataGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGATATCTTATTTATAGGAGGCATATAAATGtattat                >  1:3393498/1‑91 (MQ=255)

                                                                           taGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatc               >  1:3745337/1‑91 (MQ=255)

                                                                            aGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatca              <  1:262017/91‑1 (MQ=255)

                                                                            aGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatca              <  1:261972/91‑1 (MQ=255)

                                                                            aGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatca              <  1:261460/91‑1 (MQ=255)

                                                                             gCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatcat             <  1:508134/91‑1 (MQ=255)

                                                                             gCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatcat             >  1:100563/1‑91 (MQ=255)

                                                                             gCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatcat             >  1:3528321/1‑91 (MQ=255)

                                                                              cgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatcatc            <  1:2016229‑M2/80‑1 (MQ=255)

                                                                               gttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTAtcatca           >  1:3318557‑M2/11‑91 (MQ=255)

                                                                               gttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTAtcatca           <  1:2791302‑M2/81‑1 (MQ=255)

                                                                                  atcgcttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAAcc        <  1:3737469‑M2/84‑1 (MQ=255)

                                                                                  atcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAAcc        <  1:2957088‑M2/84‑1 (MQ=255)

                                                                                  agcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAAcc        <  1:2658409‑M2/84‑1 (MQ=255)

                                                                                    cacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgt      <  1:3786766‑M2/86‑1 (MQ=255)

                                                                                     acttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgtt     >  1:1381576‑M2/5‑91 (MQ=255)

                                                                                     acttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgtt     >  1:1381439‑M2/5‑91 (MQ=255)

                                                                                     acttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgtt     >  1:1381176‑M2/5‑91 (MQ=255)

                                                                                     acttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgtt     <  1:680449‑M2/87‑1 (MQ=255)

                                                                                     acttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgtt     <  1:680040‑M2/87‑1 (MQ=255)

                                                                                     acttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgtt     >  1:2465549‑M2/5‑91 (MQ=255)

                                                                                      cttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgttg    <  1:1172162‑M2/88‑1 (MQ=255)

                                                                                        tTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgttgtt  >  1:2159240‑M2/2‑91 (MQ=255)

TAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATAAAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT  >  USA300TCH1516_ALE/1834009‑1834187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.