| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1836934 = | 65 (0.660) | 15 (0.180) | 8/132 | NT | 21.3% | intergenic (+18/+132) | serA/gph_2 | D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase |
| ? | USA300TCH1516_ALE | 1836982 = | 57 (0.700) | intergenic (+66/+84) | serA/gph_2 | D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase | |||||
TAGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1837037‑1836934‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACA > USA300TCH1516_ALE/1836982‑1837070 TAGTGAATGATTGAACCAAAGGTTTCATATTGAGTTAAAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTC > 1:3495833/1‑91 AGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCT < 1:240248/91‑1 GTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTT > 1:1892334/1‑91 TGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTC > 1:564559/1‑91 ATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTG > 1:2172188/1‑91 ATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTG > 1:2172170/1‑91 ATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTG < 1:262839/91‑1 TGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGG < 1:3986484/91‑1 TTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCAT > 1:2145579/1‑91 TTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCAT < 1:1162244/91‑1 TGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATT > 1:2325233/1‑91 GAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTT > 1:1726786/1‑91 GAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTT > 1:669819/1‑91 GAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTT > 1:2089061/1‑91 GAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTT < 1:3071912/91‑1 GCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATC > 1:2271062/1‑91 GCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATC > 1:2250881/1‑91 GCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATC > 1:2150600/1‑91 GCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATC > 1:2151144/1‑91 AGAAGCAATGGAAGTAATCCAATGTCTTCTTGGTAATTTTTCATTATTAATTTCATTGTAACTCAATATCAAACCTTTGATTCAATAATTC > 1:1004033/1‑91 AGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACT > 1:3827026/1‑91 AGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACT > 1:71998/1‑91 GCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTA > 1:501444/1‑91 CAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAC > 1:2413063/1‑91 CAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAC > 1:2413102/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCCTTATTAATTTCCTTGTCCCTCCATATGAAACCTTTCGTTCACTCCTTCACTACA > 1:1086943/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACA > 1:2588458/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACA > 1:2587999/1‑91 GTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATG > 1:283216/1‑91 TAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGC > 1:1055685/1‑91 TTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACA < 1:307702/91‑1 TTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACA < 1:3989976/91‑1 TTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACA < 1:3782189/91‑1 TTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACA < 1:2252643/91‑1 TTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATC < 1:1630714/91‑1 TGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCA > 1:73540/1‑91 GGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAA > 1:1037422/1‑91 GGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAA > 1:2427941/1‑91 GCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAA < 1:635384/91‑1 ATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATT > 1:3488498/1‑91 ATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATT < 1:1576678/91‑1 TTTTTTCATTATTGATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAATCACTACAAGTTATGCTGTCAAACAACAATCAAATTA < 1:1450796/91‑1 TTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTA < 1:456308/91‑1 TTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTA < 1:1432520/91‑1 TTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTA < 1:865057/91‑1 TTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACA > 1:2198074/1‑91 TAGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1837037‑1836934‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACA > USA300TCH1516_ALE/1836982‑1837070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |