BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1836934 =	65 (0.660)	15 (0.180)	8/132	NT	21.3%	intergenic (+18/+132)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
*	?	USA300TCH1516_ALE	1836982 =	57 (0.700)	15 (0.180)	8/132	NT	21.3%	intergenic (+66/+84)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 116 total aligned reads displayed.

CTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACA  >  USA300TCH1516_ALE/1836894‑1837070

cTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTc                                                                                        >  1:26087/1‑91 (MQ=255)

   aaTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                                                                     >  1:689447/1‑91 (MQ=255)

     ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                                   >  1:943974/1‑91 (MQ=255)

     ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                                   <  1:1339208/91‑1 (MQ=255)

      tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                                  <  1:3261112/91‑1 (MQ=255)

      tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                                  <  1:223539/91‑1 (MQ=255)

      tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAATTTTTCattatt                                                                                  <  1:3173739/91‑1 (MQ=255)

         cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                                                               >  1:820204/1‑91 (MQ=255)

         cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                                                               >  1:820834/1‑91 (MQ=255)

          ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                                                              <  1:3015498/91‑1 (MQ=255)

          ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                                                              <  1:3015254/91‑1 (MQ=255)

            tACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTc                                                                            <  1:3068654/91‑1 (MQ=255)

             aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCGTTATTAATTTCa                                                                           <  1:3201713/91‑1 (MQ=255)

             aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                                                                           <  1:3014567/91‑1 (MQ=255)

                gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                                        >  1:1291217/1‑91 (MQ=255)

                gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                                        <  1:2363036/91‑1 (MQ=255)

                gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                                        >  1:1117725/1‑91 (MQ=255)

                 tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                                       >  1:666024/1‑91 (MQ=255)

                 tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                                       >  1:364226/1‑91 (MQ=255)

                  cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTa                                                                      <  1:2375099/91‑1 (MQ=255)

                    tAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAAc                                                                    <  1:1421988/91‑1 (MQ=255)

                      aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                                  >  1:3534189/1‑91 (MQ=255)

                      aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                                  <  1:2241759/91‑1 (MQ=255)

                          aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                              >  1:1042043/1‑91 (MQ=255)

                          aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                              >  1:2227880/1‑91 (MQ=255)

                          aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                              >  1:2227852/1‑91 (MQ=255)

                           tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                             >  1:1502841/1‑91 (MQ=255)

                           tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                             >  1:1502707/1‑91 (MQ=255)

                           tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                             <  1:2191906/91‑1 (MQ=255)

                            ttATGTAAATTCAAAATGCCAAGAAGTCATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                                                            <  1:2995283/91‑1 (MQ=255)

                             tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                                           <  1:1700337/91‑1 (MQ=255)

                             tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                                           <  1:1860706/91‑1 (MQ=255)

                             tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                                           <  1:1860792/91‑1 (MQ=255)

                             tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACCTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                                           >  1:3497102/1‑91 (MQ=255)

                              aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                                          <  1:1515826/91‑1 (MQ=255)

                              aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                                          <  1:2810364/91‑1 (MQ=255)

                              aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                                          <  1:2090784/91‑1 (MQ=255)

                               tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                                         <  1:2312880/91‑1 (MQ=255)

                                 tAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAcc                                                       >  1:575429/1‑91 (MQ=255)

                                       cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                 <  1:276745/91‑1 (MQ=255)

                                       cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                 <  1:276801/91‑1 (MQ=255)

                                         AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                               >  1:2089061‑M1/1‑91 (MQ=255)

                                         AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                               >  1:1726786‑M1/1‑91 (MQ=255)

                                         AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                               >  1:669819‑M1/1‑91 (MQ=255)

                                           ATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCaa                                             >  1:2145579‑M1/1‑91 (MQ=255)

                                             gccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                           >  1:2250881‑M2/44‑91 (MQ=255)

                                             gccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                           >  1:2271062‑M2/44‑91 (MQ=255)

                                             gccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                           >  1:2151144‑M2/44‑91 (MQ=255)

                                             gccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                           >  1:2150600‑M2/44‑91 (MQ=255)

                                              CCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa                                          <  1:3986484‑M1/91‑1 (MQ=255)

                                               CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt                                         >  1:2172188‑M1/1‑91 (MQ=255)

                                                 agaagcaatggaagtaatccaatgtcttcttggtaatttTTCATTATTAATTTCATTGTAACTCAATATCAAACCTTTGATTCAATAATTc                                       >  1:1004033‑M2/40‑91 (MQ=255)

                                                  GAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCa                                      >  1:564559‑M1/1‑91 (MQ=255)

                                                   AAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCAc                                     >  1:1892334‑M1/1‑91 (MQ=255)

                                                    agcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                                    >  1:3827026‑M2/37‑91 (MQ=255)

                                                    AGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                                    <  1:240248‑M1/91‑1 (MQ=255)

                                                     gcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa                                   >  1:501444‑M2/36‑91 (MQ=255)

                                                     GACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTTTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa                                   >  1:3495833‑M1/1‑91 (MQ=255)

                                                      caatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAc                                  >  1:2413063‑M2/35‑91 (MQ=255)

                                                      caatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAc                                  >  1:2413102‑M2/35‑91 (MQ=255)

                                                       cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                 >  1:2620570/1‑91 (MQ=255)

                                                       cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                 >  1:2620569/1‑91 (MQ=255)

                                                       aatggaagtaatccaatgtcttcttggcattttTTCCTTATTAATTTCCTTGTCCCTCCATATGAAACCTTTCGTTCACTCCTTCACTACa                                 >  1:1086943‑M2/34‑91 (MQ=255)

                                                       aatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                 >  1:2588458‑M2/34‑91 (MQ=255)

                                                       aatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                 >  1:2587999‑M2/34‑91 (MQ=255)

                                                         ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAg                               <  1:954944/91‑1 (MQ=255)

                                                          tGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGt                              <  1:1190818/91‑1 (MQ=255)

                                                             aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt                           >  1:1006374/1‑91 (MQ=255)

                                                             aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt                           <  1:2037570/91‑1 (MQ=255)

                                                              gtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATg                          >  1:283216‑M2/27‑91 (MQ=255)

                                                               taatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGc                         >  1:1055685‑M2/26‑91 (MQ=255)

                                                                aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt                        <  1:2967626/91‑1 (MQ=255)

                                                                  ttCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGt                      <  1:399025/91‑1 (MQ=255)

                                                                    ccATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCa                    >  1:1763348/1‑91 (MQ=255)

                                                                    ccATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCGTTGGTTCAATCATTCACTACAAGTTATGCTGTCa                    <  1:2266227/91‑1 (MQ=255)

                                                                     cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa                   >  1:2565203/1‑91 (MQ=255)

                                                                     cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa                   >  1:1413103/1‑91 (MQ=255)

                                                                     cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa                   >  1:1275521/1‑91 (MQ=255)

                                                                     cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa                   >  1:3234826/1‑91 (MQ=255)

                                                                     cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa                   >  1:3158605/1‑91 (MQ=255)

                                                                      aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa                  >  1:2729661/1‑91 (MQ=255)

                                                                      aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa                  >  1:2729674/1‑91 (MQ=255)

                                                                      aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa                  >  1:2089219/1‑91 (MQ=255)

                                                                       ttGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaac                 >  1:2579777/1‑91 (MQ=255)

                                                                         gCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaa               >  1:627418/1‑91 (MQ=255)

                                                                           ttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAacaaca             <  1:307702‑M2/78‑1 (MQ=255)

                                                                           ttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAacaaca             <  1:3989976‑M2/78‑1 (MQ=255)

                                                                           ttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAacaaca             <  1:2252643‑M2/78‑1 (MQ=255)

                                                                           ttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAacaaca             <  1:3782189‑M2/78‑1 (MQ=255)

                                                                              ttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATc          <  1:1630714‑M2/81‑1 (MQ=255)

                                                                               tggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCa         >  1:73540‑M2/10‑91 (MQ=255)

                                                                                ggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCaa        >  1:2427941‑M2/9‑91 (MQ=255)

                                                                                ggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCaa        >  1:1037422‑M2/9‑91 (MQ=255)

                                                                                 gcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCaaa       <  1:635384‑M2/84‑1 (MQ=255)

                                                                                   attttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAAtt     <  1:1576678‑M2/86‑1 (MQ=255)

                                                                                   attttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAAtt     >  1:3488498‑M2/6‑91 (MQ=255)

                                                                                    ttttTTCATTATTGATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAATCACTACAAGTTATGCTGTCAAACAACAATCAAATTa    <  1:1450796‑M2/87‑1 (MQ=255)

                                                                                    ttttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTa    <  1:456308‑M2/87‑1 (MQ=255)

                                                                                    ttttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTa    <  1:865057‑M2/87‑1 (MQ=255)

                                                                                      ttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACa  >  1:2198074‑M2/3‑91 (MQ=255)

CTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACA  >  USA300TCH1516_ALE/1836894‑1837070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.