New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1836934 =65 (0.660)15 (0.180) 8/132 NT 21.3% intergenic (+18/+132) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
?USA300TCH1516_ALE 1836982 = 57 (0.700)intergenic (+66/+84) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 135 total aligned reads displayed.

TATAATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTT  >  USA300TCH1516_ALE/1836844‑1837024
                                                                                          |                                                                                          
tataATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCA                                                                                            <  1:526544‑M1/91‑1 (MQ=255)
 tgtaatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaaa                                                                                           >  1:2198074‑M1/90‑91 (MQ=255)
 ataATTGATGAACTTAAACAAGTTGGTGAATACAATCCAATTTTCACAACTGAATTGACTGTACAGTCATAAACAATTTATGTAAATTCAA                                                                                           >  1:3307971‑M1/1‑91 (MQ=255)
 ataATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAA                                                                                           >  1:2561770‑M1/1‑91 (MQ=255)
 ataATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAA                                                                                           >  1:479408‑M1/1‑91 (MQ=255)
   taatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaaaaa                                                                                         <  1:865057‑M1/4‑1 (MQ=255)
   aaTTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAA                                                                                         >  1:109223‑M1/1‑91 (MQ=255)
    aatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAAt                                                                                        <  1:1576678‑M1/5‑1 (MQ=255)
    aTTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAtg                                                                                        <  1:1895514‑M1/91‑3 (MQ=255)
     ttGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATG                                                                                       <  1:149254‑M1/91‑1 (MQ=255)
       ttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGcc                                                                                     >  1:1037422‑M1/84‑91 (MQ=255)
       ttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGcc                                                                                     >  1:2427941‑M1/84‑91 (MQ=255)
       gatgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCC                                                                                     >  1:1343064‑M1/1‑91 (MQ=255)
        atgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCA                                                                                    >  1:1512039‑M1/1‑91 (MQ=255)
         tgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAA                                                                                   >  1:2653931‑M1/1‑91 (MQ=255)
         tgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAA                                                                                   <  1:1455363‑M1/91‑1 (MQ=255)
         gattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaa                                                                                   <  1:1630714‑M1/10‑1 (MQ=255)
          gaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAG                                                                                  <  1:2699035‑M1/91‑1 (MQ=255)
          gaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAG                                                                                  <  1:2805029‑M1/91‑1 (MQ=255)
            tgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaagaa                                                                                <  1:3989976‑M1/13‑1 (MQ=255)
            tgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaagaa                                                                                <  1:2252643‑M1/13‑1 (MQ=255)
            tgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaagaa                                                                                <  1:307702‑M1/13‑1 (MQ=255)
            aCTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAA                                                                                >  1:181052‑M1/1‑91 (MQ=255)
            aCTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAA                                                                                >  1:3811691‑M1/1‑91 (MQ=255)
             cTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAG                                                                               >  1:1271987‑M1/1‑91 (MQ=255)
              ttAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAagaaga                                                                              <  1:4039096/91‑1 (MQ=255)
                aaaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACa                                                                            <  1:3705661/91‑1 (MQ=255)
                aaaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACa                                                                            <  1:3705688/91‑1 (MQ=255)
                    aaGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatgga                                                                        <  1:2868583‑M1/91‑8 (MQ=255)
                     aGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGa                                                                       >  1:1372084/1‑91 (MQ=255)
                       ttGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAtt                                                                     >  1:3389042/1‑91 (MQ=255)
                        tGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTa                                                                    <  1:1871079/91‑1 (MQ=255)
                         ggTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTAc                                                                   <  1:3892376/91‑1 (MQ=255)
                           tGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACtt                                                                 <  1:2280809/91‑1 (MQ=255)
                           tGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACtt                                                                 <  1:572685/91‑1 (MQ=255)
                           tGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACtt                                                                 <  1:348633/91‑1 (MQ=255)
                           tGAATACAATCAAATTTTCACAACTGAATGGACGGTACAGTCATAAACAATGTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACtt                                                                 <  1:2445231/91‑1 (MQ=255)
                            gAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTc                                                                >  1:442395/1‑91 (MQ=255)
                              aTACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCa                                                              <  1:1207464/91‑1 (MQ=255)
                              aTACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCa                                                              <  1:1439739/91‑1 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            >  1:2588458‑M1/59‑91 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            >  1:2587999‑M1/59‑91 (MQ=255)
                                tgtagtgaaggagtgaacgaaaggtttcatatggagggacaaggaaattaataaggaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            >  1:1086943‑M1/59‑91 (MQ=255)
                                aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatg                                                            <  1:2972479‑M1/91‑20 (MQ=255)
                                aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            <  1:614459/91‑1 (MQ=255)
                                 gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                           >  1:2413102‑M1/58‑91 (MQ=255)
                                 cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgt                                                           <  1:1925965‑M1/91‑21 (MQ=255)
                                 cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                           <  1:3261916/91‑1 (MQ=255)
                                  tagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGc                                                          >  1:501444‑M1/57‑91 (MQ=255)
                                   agtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                         >  1:71998‑M1/56‑91 (MQ=255)
                                   agtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                         >  1:3827026‑M1/56‑91 (MQ=255)
                                      gaattattgaatcaaaggtttgatattgagttacaatgaaattaataatgaaAAATTACCAAGAAGACATTGGATTACTTCCATTGcttct                                                      >  1:1004033‑M1/53‑91 (MQ=255)
                                      atggtttcacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttct                                                      >  1:339524‑M2/5‑86 (MQ=255)
                                      aaaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttct                                                      <  1:1453831‑M1/91‑26 (MQ=255)
                                       aaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                     >  1:2171356‑M2/1‑85 (MQ=255)
                                        aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                    >  1:940107‑M2/1‑84 (MQ=255)
                                        aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                    <  1:3142604‑M2/91‑8 (MQ=255)
                                          gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                  >  1:2151144‑M1/49‑91 (MQ=255)
                                          gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                  >  1:2271062‑M1/49‑91 (MQ=255)
                                           ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttcttggca                                                 <  1:2316820‑M1/91‑31 (MQ=255)
                                             cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                               <  1:2187874‑M2/91‑13 (MQ=255)
                                             cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                               <  1:2015863‑M2/91‑13 (MQ=255)
                                             cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                               <  1:2733523‑M2/91‑13 (MQ=255)
                                               caACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                             <  1:1438520‑M2/91‑15 (MQ=255)
                                                     aaTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                       >  1:689447/1‑91 (MQ=255)
                                                       ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                     >  1:943974/1‑91 (MQ=255)
                                                        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                    <  1:223550/91‑1 (MQ=255)
                                                        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAATTTTTCattatt                                    <  1:3173739/91‑1 (MQ=255)
                                                          aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                  <  1:2007053/91‑1 (MQ=255)
                                                           cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                 >  1:820204/1‑91 (MQ=255)
                                                           cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                 >  1:820834/1‑91 (MQ=255)
                                                            ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                <  1:3015498/91‑1 (MQ=255)
                                                              tACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTc                              <  1:3068654/91‑1 (MQ=255)
                                                               aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCGTTATTAATTTCa                             <  1:3201713/91‑1 (MQ=255)
                                                               aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                             <  1:3014567/91‑1 (MQ=255)
                                                                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                          >  1:1117725/1‑91 (MQ=255)
                                                                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                          >  1:1291217/1‑91 (MQ=255)
                                                                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                          <  1:2363036/91‑1 (MQ=255)
                                                                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                         >  1:364226/1‑91 (MQ=255)
                                                                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                         >  1:666024/1‑91 (MQ=255)
                                                                    cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTa                        <  1:2375099/91‑1 (MQ=255)
                                                                      tAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAAc                      <  1:1421988/91‑1 (MQ=255)
                                                                        aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                    <  1:2241759/91‑1 (MQ=255)
                                                                        aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                    >  1:3534189/1‑91 (MQ=255)
                                                                          cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa                  >  1:3411228/1‑91 (MQ=255)
                                                                            aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                >  1:2227852/1‑91 (MQ=255)
                                                                            aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                >  1:2227880/1‑91 (MQ=255)
                                                                            aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                >  1:1042043/1‑91 (MQ=255)
                                                                             tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat               >  1:1502841/1‑91 (MQ=255)
                                                                              ttATGTAAATTCAAAATGCCAAGAAGTCATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg              <  1:2995283/91‑1 (MQ=255)
                                                                               tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa             <  1:1700337/91‑1 (MQ=255)
                                                                               tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa             <  1:1860706/91‑1 (MQ=255)
                                                                               tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACCTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa             >  1:3497102/1‑91 (MQ=255)
                                                                                aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa            <  1:1515826/91‑1 (MQ=255)
                                                                                aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa            <  1:2810364/91‑1 (MQ=255)
                                                                                aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa            <  1:2090784/91‑1 (MQ=255)
                                                                                   tAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAcc         >  1:575429/1‑91 (MQ=255)
                                                                                         cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt   <  1:2904207/91‑1 (MQ=255)
                                                                                         cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt   <  1:276801/91‑1 (MQ=255)
                                                                                          aaaaTGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttg  <  1:1438520‑M1/91‑78 (MQ=255)
                                                                                          |                                                                                          
TATAATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTT  >  USA300TCH1516_ALE/1836844‑1837024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.