| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1838263 | 89 (0.910) | 9 (0.100) | 7/140 | NT | 9.7% | intergenic (‑67/+40) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component |
| ? | USA300TCH1516_ALE | = 1838279 | 90 (1.050) | intergenic (‑83/+24) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component | |||||
AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1838164‑1838263‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcaaaTCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA < USA300TCH1516_ALE/1838279‑1838190 AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA > 1:417409/1‑91AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA > 1:4064390/1‑91AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA > 1:2275613/1‑91 CGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAA > 1:1063832/1‑91 CGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAA > 1:82199/1‑91 CGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAA > 1:2991968/1‑91 CGCCAGCAACATCAAATAAAATTTTCTTCACAATCCCCAGTCCATTTCTGAAAGTTCAGATATAAATCATTCTACTATTTGACTAAAAAAA < 1:3855286/91‑1 GCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAG > 1:399423/1‑91 CATCAACATAAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAGAAAAGCG > 1:2079064/1‑91 ATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGC < 1:607343/91‑1 TCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCA > 1:19523/1‑91 CAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAA < 1:1075836/91‑1 CAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAA < 1:383146/91‑1 AACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA < 1:910229/91‑1 TTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAG < 1:1425220/91‑1 TTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGG < 1:993755/91‑1 TTCACAATCCCCACTCCATTTCTGAATATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTT < 1:1381763/91‑1 TTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTT < 1:1381522/91‑1 TTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTT < 1:1381945/91‑1 TCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTG < 1:2911123/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 1:3155256/91‑1 ACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCG < 1:314550/91‑1 CAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGC < 1:3205312/91‑1 AAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGA > 1:2924452/1‑91 AAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGA > 1:2924527/1‑91 AAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT > 1:1372292/1‑91 AAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT > 1:2721473/1‑91 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG > 1:2031624/1‑91 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG < 1:1673718/91‑1 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG > 1:359267/1‑91 CGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGT < 1:770366/91‑1 AAATCTAACTTCAATCGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATATGAATTTTCAGAAATGGAGTGGGGATTGTGAA > 1:3531796/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTTAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 1:2020700/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 1:2239800/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 1:615635/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 1:2417671/1‑91 ATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA > 1:2234232/1‑91 AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1838164‑1838263‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcaaaTCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA < USA300TCH1516_ALE/1838279‑1838190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |