BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1838263	89 (0.910)	9 (0.100)	7/140	NT	9.7%	intergenic (‑67/+40)	gph_2/nagE	Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component
*	?	USA300TCH1516_ALE	= 1838279	90 (1.050)	9 (0.100)	7/140	NT	9.7%	intergenic (‑83/+24)	gph_2/nagE	Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component

Only 100 of 141 total aligned reads displayed.

TTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAA  >  USA300TCH1516_ALE/1838189‑1838369

ttcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGa                                                                                            <  1:112374/91‑1 (MQ=255)

ttcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGa                                                                                            <  1:1612967/91‑1 (MQ=255)

  cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt                                                                                          <  1:2239800‑M2/91‑3 (MQ=255)

  cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt                                                                                          >  1:615635‑M2/1‑89 (MQ=255)

  cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt                                                                                          >  1:2417671‑M2/1‑89 (MQ=255)

  cttcACAATCCCCACTCCATTTCTGAAAATTAAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt                                                                                          >  1:2020700‑M2/1‑89 (MQ=255)

   ttcACAATCCCCACTCCATTTCTGAAAATTCATATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCGATTGAAGTTAGAttt                                                                                         >  1:3531796‑M2/1‑88 (MQ=255)

      acaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcg                                                                                      <  1:770366‑M2/91‑7 (MQ=255)

       caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgc                                                                                     >  1:2031624‑M2/1‑84 (MQ=255)

       caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgc                                                                                     <  1:1673718‑M2/91‑8 (MQ=255)

         aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgctt                                                                                   >  1:1372292‑M2/1‑82 (MQ=255)

         aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgctt                                                                                   >  1:2721473‑M2/1‑82 (MQ=255)

          tCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgcttt                                                                                  >  1:2924527‑M2/1‑81 (MQ=255)

          tCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgcttt                                                                                  >  1:2924452‑M2/1‑81 (MQ=255)

           ccccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTa                                                                                 >  1:3449437/1‑91 (MQ=255)

           ccccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTa                                                                                 <  1:2334491/91‑1 (MQ=255)

             ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGc                                                                               >  1:1921151/1‑91 (MQ=255)

             ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGc                                                                               >  1:2778305/1‑91 (MQ=255)

              cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCt                                                                              >  1:2211643/1‑91 (MQ=255)

              cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCt                                                                              >  1:3805634/1‑91 (MQ=255)

              cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCt                                                                              >  1:2357171/1‑91 (MQ=255)

              cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCt                                                                              >  1:196151/1‑91 (MQ=255)

               aCTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTg                                                                             <  1:3697365/91‑1 (MQ=255)

                cTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGt                                                                            <  1:2131955/91‑1 (MQ=255)

                cTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGt                                                                            <  1:2438183/91‑1 (MQ=255)

                 tCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGtt                                                                           <  1:1928727/91‑1 (MQ=255)

                 tCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGtt                                                                           <  1:585093/91‑1 (MQ=255)

                 tCCATTTCTGAAAATTCAGATATAAATCATTCTACTAGTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGtt                                                                           >  1:3504848/1‑91 (MQ=255)

                  ccATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGttt                                                                          <  1:2152886/91‑1 (MQ=255)

                  ccATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGttt                                                                          <  1:1993301/91‑1 (MQ=255)

                    aTTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTaa                                                                        <  1:1238299/91‑1 (MQ=255)

                      ttCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAt                                                                      <  1:1034798/91‑1 (MQ=255)

                           aaaaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtat                                                                 <  1:1046105/91‑1 (MQ=255)

                           aaaaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtat                                                                 <  1:1252412/91‑1 (MQ=255)

                            aaaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtata                                                                <  1:987654/91‑1 (MQ=255)

                            aaaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtata                                                                <  1:987527/91‑1 (MQ=255)

                            aaaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtata                                                                <  1:3074767/91‑1 (MQ=255)

                             aaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaa                                                               <  1:1281473/91‑1 (MQ=255)

                             aaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaa                                                               <  1:2633030/91‑1 (MQ=255)

                                 cAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGt                                                           <  1:345567/91‑1 (MQ=255)

                                 cAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGt                                                           <  1:344821/91‑1 (MQ=255)

                                   gATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt                                                         <  1:3070235/91‑1 (MQ=255)

                                    atatAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGtttt                                                        <  1:2927557/91‑1 (MQ=255)

                                    atatAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGtttt                                                        >  1:25859/1‑91 (MQ=255)

                                    atatAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGtttt                                                        >  1:1363523/1‑91 (MQ=255)

                                     tataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt                                                       <  1:2911956/91‑1 (MQ=255)

                                            cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc                                                <  1:3471140/91‑1 (MQ=255)

                                            cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc                                                <  1:1789278/91‑1 (MQ=255)

                                            cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc                                                <  1:1206080/91‑1 (MQ=255)

                                              ttCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcat                                              <  1:3448918/91‑1 (MQ=255)

                                               tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc                                             >  1:36053/1‑91 (MQ=255)

                                               tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc                                             >  1:2884161/1‑91 (MQ=255)

                                               tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc                                             <  1:29310/91‑1 (MQ=255)

                                                       ttGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACct                                     <  1:1519322/91‑1 (MQ=255)

                                                         gACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc                                   <  1:3665649/91‑1 (MQ=255)

                                                         gACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc                                   >  1:548344/1‑91 (MQ=255)

                                                         gACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc                                   <  1:2727545/91‑1 (MQ=255)

                                                          aCTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgct                                  >  1:319934/1‑91 (MQ=255)

                                                          aCTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctact                                  >  1:363442/1‑88 (MQ=255)

                                                             aaaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTa                               <  1:120739/91‑1 (MQ=255)

                                                             aaaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTa                               <  1:2559175/91‑1 (MQ=255)

                                                             aaaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTa                               <  1:1500270/91‑1 (MQ=255)

                                                              aaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTAc                              <  1:298360/91‑1 (MQ=255)

                                                                aaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgt                            <  1:1738577/91‑1 (MQ=255)

                                                                 aaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtg                           >  1:2664066/1‑91 (MQ=255)

                                                                  aaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtgt                          >  1:786048/1‑91 (MQ=255)

                                                                  aaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTATAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtgt                          >  1:3600129/1‑91 (MQ=255)

                                                                   aGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtgtg                         >  1:344987/1‑91 (MQ=255)

                                                                     cgcAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgt                       <  1:314550‑M2/91‑70 (MQ=255)

                                                                      gcAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtg                      <  1:3155256‑M2/91‑71 (MQ=255)

                                                                      gcAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAc                      <  1:2925316/91‑1 (MQ=255)

                                                                       cAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtga                     <  1:2911123‑M2/91‑72 (MQ=255)

                                                                       cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc                     >  1:841778/1‑91 (MQ=255)

                                                                       cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc                     >  1:668320/1‑91 (MQ=255)

                                                                       cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc                     <  1:1252053/91‑1 (MQ=255)

                                                                       cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc                     <  1:1644852/91‑1 (MQ=255)

                                                                        aaaCCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaa                    <  1:1381945‑M2/91‑73 (MQ=255)

                                                                        aaaCCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaa                    <  1:1381522‑M2/91‑73 (MQ=255)

                                                                         aaCCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGa                   >  1:3946992/1‑91 (MQ=255)

                                                                         aaCCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGa                   >  1:4057838/1‑91 (MQ=255)

                                                                         aaCCCTATTGAAGTTAGATTTGCGCGTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGa                   <  1:3845510/91‑1 (MQ=255)

                                                                          aCCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAc                  <  1:870421/91‑1 (MQ=255)

                                                                          aCCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAc                  <  1:1451715/91‑1 (MQ=255)

                                                                           cccTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACa                 >  1:1457323/1‑91 (MQ=255)

                                                                           cccTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACa                 >  1:2644751/1‑91 (MQ=255)

                                                                           cccTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATCTCATCAGCAACCTGCTGTACGTGTGTACCGACa                 >  1:3400162/1‑91 (MQ=255)

                                                                             cTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaagaaaa               <  1:1425220‑M2/91‑78 (MQ=255)

                                                                               aTTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATaa             >  1:363846/1‑91 (MQ=255)

                                                                                 tGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACt           <  1:1957325/91‑1 (MQ=255)

                                                                                   aaGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTg         >  1:2769976/1‑91 (MQ=255)

                                                                                     gTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAg       <  1:3039172/91‑1 (MQ=255)

                                                                                      ttAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGt      >  1:1827940/1‑91 (MQ=255)

                                                                                      ttAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGt      >  1:3924399/1‑91 (MQ=255)

                                                                                      ttAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGt      <  1:2275875/91‑1 (MQ=255)

                                                                                       tAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGtt     <  1:3633056/91‑1 (MQ=255)

                                                                                       tAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGtt     <  1:2241959/91‑1 (MQ=255)

                                                                                        aGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTg    <  1:1282880/91‑1 (MQ=255)

                                                                                        aGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTg    >  1:3398354/1‑91 (MQ=255)

                                                                                        aGATTTGCGCTGTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTg    <  1:3764295/91‑1 (MQ=255)

                                                                                          aTTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGaa  <  1:4071318/91‑1 (MQ=255)

TTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGACAATAACTTGAGTTGAA  >  USA300TCH1516_ALE/1838189‑1838369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.