| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1838263 | 89 (0.910) | 9 (0.100) | 7/140 | NT | 9.7% | intergenic (‑67/+40) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component |
| ? | USA300TCH1516_ALE | = 1838279 | 90 (1.050) | intergenic (‑83/+24) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component | |||||
Only 100 of 158 total aligned reads displayed.
AACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAC > USA300TCH1516_ALE/1838173‑1838353 | aacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA < 1:910229‑M1/91‑1 (MQ=255) acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAc < 1:1219790/91‑1 (MQ=255) catcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAACGCGCAAAcc > 1:3965842/1‑91 (MQ=255) caaATAAGATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTa < 1:2072135/91‑1 (MQ=255) caaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTa < 1:1451120/91‑1 (MQ=255) caaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTa > 1:3759714/1‑91 (MQ=255) aaTAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTAtt > 1:3204316/1‑91 (MQ=255) aaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGt < 1:56698/91‑1 (MQ=255) aTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGtt < 1:4124027/91‑1 (MQ=255) aTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGtt > 1:3376629/1‑91 (MQ=255) ttttCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatag < 1:1425220‑M1/91‑15 (MQ=255) ttttCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTa < 1:504384/91‑1 (MQ=255) tttCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAg > 1:76405/1‑91 (MQ=255) ttcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGa < 1:112409/91‑1 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAt > 1:2234232‑M2/1‑90 (MQ=255) cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt > 1:615635‑M2/1‑89 (MQ=255) cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt > 1:2417671‑M2/1‑89 (MQ=255) ttcACAATCCCCACTCCATTTCTGAATATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggttt < 1:1381763‑M1/91‑20 (MQ=255) ttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggttt < 1:1381945‑M1/91‑20 (MQ=255) tcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttg < 1:2911123‑M1/91‑21 (MQ=255) cacaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgc < 1:3155256‑M1/91‑22 (MQ=255) acaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgcg < 1:314550‑M1/91‑23 (MQ=255) acaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcg < 1:770366‑M2/91‑7 (MQ=255) caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgc < 1:1673718‑M2/91‑8 (MQ=255) caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgc > 1:2031624‑M2/1‑84 (MQ=255) caATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgc > 1:359267‑M2/1‑84 (MQ=255) aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgctt > 1:1372292‑M2/1‑82 (MQ=255) tCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgcttt > 1:2924452‑M2/1‑81 (MQ=255) ccccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTa > 1:3449464/1‑91 (MQ=255) ccccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTa < 1:2334491/91‑1 (MQ=255) cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCt > 1:2211643/1‑91 (MQ=255) cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCt > 1:3805634/1‑91 (MQ=255) cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCt > 1:2357171/1‑91 (MQ=255) aCTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTg < 1:3697365/91‑1 (MQ=255) cTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGt < 1:2131955/91‑1 (MQ=255) tCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGtt < 1:1928727/91‑1 (MQ=255) tCCATTTCTGAAAATTCAGATATAAATCATTCTACTAGTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGtt > 1:3504848/1‑91 (MQ=255) ccATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGttt < 1:1993301/91‑1 (MQ=255) ccATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGttt < 1:3903085/91‑1 (MQ=255) ttCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAt < 1:1034798/91‑1 (MQ=255) aaaaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtat < 1:1046105/91‑1 (MQ=255) aaaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtata < 1:987654/91‑1 (MQ=255) aaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaa < 1:1281473/91‑1 (MQ=255) aaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaa > 1:1713986/1‑91 (MQ=255) aaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaa < 1:2633030/91‑1 (MQ=255) cAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGt < 1:345567/91‑1 (MQ=255) cAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGt < 1:344844/91‑1 (MQ=255) gATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt < 1:3070235/91‑1 (MQ=255) gATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt < 1:3069855/91‑1 (MQ=255) atatAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGtttt > 1:25859/1‑91 (MQ=255) atatAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGtttt < 1:2927183/91‑1 (MQ=255) tataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt < 1:2911956/91‑1 (MQ=255) tataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt < 1:2912029/91‑1 (MQ=255) cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 1:1834546/91‑1 (MQ=255) cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 1:1206080/91‑1 (MQ=255) cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 1:1789278/91‑1 (MQ=255) cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 1:3471140/91‑1 (MQ=255) ttCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcat < 1:3448918/91‑1 (MQ=255) tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc < 1:29310/91‑1 (MQ=255) tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc < 1:2253182/91‑1 (MQ=255) tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc > 1:2888970/1‑91 (MQ=255) tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc > 1:2884161/1‑91 (MQ=255) tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc > 1:36053/1‑91 (MQ=255) ctaTTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCa > 1:559644/1‑91 (MQ=255) ttGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACct < 1:1519322/91‑1 (MQ=255) gACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc < 1:2727545/91‑1 (MQ=255) gACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc < 1:3665649/91‑1 (MQ=255) aCTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctact > 1:363442/1‑88 (MQ=255) aaaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTa < 1:1500270/91‑1 (MQ=255) aaaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTa < 1:2559175/91‑1 (MQ=255) aaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTAc < 1:809837/91‑1 (MQ=255) aaaGCGCAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtgggga > 1:2924527‑M1/1‑10 (MQ=255) aaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtg > 1:2664066/1‑91 (MQ=255) aaGCGCAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggat > 1:2721473‑M1/1‑9 (MQ=255) aaGCGCAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggat > 1:1372292‑M1/1‑9 (MQ=255) gcgcAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattg > 1:359267‑M1/1‑7 (MQ=255) gcgcAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattg > 1:2031624‑M1/1‑7 (MQ=255) gcgcAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattg < 1:3205312‑M2/91‑69 (MQ=255) cgcAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgt < 1:314550‑M2/91‑70 (MQ=255) gcAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtg < 1:3155256‑M2/91‑71 (MQ=255) gcAAACCCTATTGAAGTTAGATTTGCGCTTTATCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAc < 1:1235515/91‑1 (MQ=255) gcAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAc < 1:2925316/91‑1 (MQ=255) gcAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAc < 1:1358580/91‑1 (MQ=255) cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc > 1:3987248/1‑91 (MQ=255) cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc < 1:1644852/91‑1 (MQ=255) cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc > 1:363413/1‑91 (MQ=255) cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc > 1:668320/1‑91 (MQ=255) cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc < 1:1252053/91‑1 (MQ=255) cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc > 1:841778/1‑91 (MQ=255) cAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc > 1:908681/1‑91 (MQ=255) aaatctaacttcaatcgggtttgcgctttttttagtcaaatagtagaatgatttatatatgaattttcagaaatggagtggggattgtgaa > 1:3531796‑M1/1‑3 (MQ=255) aaaCCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaa < 1:1381522‑M2/91‑73 (MQ=255) aaaCCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCg > 1:1630425/1‑91 (MQ=255) aatctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatcttaattttcagaaatggagtggggattgtgaag > 1:2020700‑M1/1‑2 (MQ=255) aatctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaag < 1:2239800‑M1/91‑90 (MQ=255) aatctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaag > 1:615635‑M1/1‑2 (MQ=255) aatctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaag > 1:2417671‑M1/1‑2 (MQ=255) aaCCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGa < 1:2769283/91‑1 (MQ=255) aaCCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGa > 1:4057838/1‑91 (MQ=255) aCCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAc < 1:1451715/91‑1 (MQ=255) | AACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAC > USA300TCH1516_ALE/1838173‑1838353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |