| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1841996 | 64 (0.650) | 12 (0.150) | 7/134 | NT | 17.4% | intergenic (+36/+58) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | = 1842015 | 60 (0.730) | intergenic (+55/+39) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase | |||||
ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1841894‑1841996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcctactcatATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < USA300TCH1516_ALE/1842015‑1841926 ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA < 1:1519184/91‑1ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTCCTTTAGATAATTTACAGACAGAAAAGTACATTAA > 1:911908/1‑91 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG < 1:3268517/91‑1 CAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGA < 1:1386400/91‑1 AAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG < 1:4117853/91‑1 AAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG < 1:90263/91‑1 AAAACGTCAAAGCCGATCAGAACATCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG < 1:1107389/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC < 1:676982/91‑1 AACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCC < 1:149798/91‑1 AACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCC < 1:2565384/91‑1 AACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCC > 1:2142805/1‑91 CGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTA < 1:2266399/91‑1 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT > 1:328564/1‑91 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT > 1:330239/1‑91 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT > 1:2353864/1‑91 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT < 1:874759/91‑1 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT < 1:875039/91‑1 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT < 1:1252552/91‑1 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:2010102/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:2010323/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:2010073/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:2228456/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC < 1:1823624/91‑1 AAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCA > 1:1032717/1‑91 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 1:170719/91‑1 ACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAA < 1:2303819/91‑1 ATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGT < 1:1546530/91‑1 ATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATGCCTAAGAATGT < 1:2385433/91‑1 ATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATT‑AGAGCCTACTCATATTCATTCCTAAGAATGTA < 1:829814/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 1:1466108/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 1:1466131/91‑1 CACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑A < 1:253513/91‑1 CACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑A < 1:253700/91‑1 ACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑AT < 1:2037411/91‑1 ACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑AT < 1:1598754/91‑1 CCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATG < 1:2140827/91‑1 CCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATG < 1:866241/91‑1 AGAGCCTACTCTTATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 1:144134/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 1:3059564/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 1:3059804/91‑1 GAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC < 1:1514211/91‑1 GAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC < 1:3084760/91‑1 GAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC > 1:3632016/1‑91 GAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC > 1:3632174/1‑91 AGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCT < 1:81831/91‑1 GCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTT > 1:3876064/1‑91 TACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGC < 1:2995958/91‑1 TACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGC < 1:2038044/91‑1 ACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 1:1054368/1‑91 CTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCA < 1:1969057/91‑1 TCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAG < 1:2238410/91‑1 CATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGG > 1:2309187/1‑91 CATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGG < 1:180207/91‑1 ATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGT > 1:221677/1‑91 ATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGT > 1:897918/1‑91 ATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCACC‑TGGCCAaggc < 1:2845606/91‑5 ATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCACC‑TGGCCAaggc < 1:2845583/91‑5 TATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < 1:736717/91‑1 TATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < 1:2845010/91‑1 ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1841894‑1841996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcctactcatATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < USA300TCH1516_ALE/1842015‑1841926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |