BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1841996	64 (0.650)	12 (0.150)	7/134	NT	17.4%	intergenic (+36/+58)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1842015	60 (0.730)	12 (0.150)	7/134	NT	17.4%	intergenic (+55/+39)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 139 total aligned reads displayed.

TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGT  >  USA300TCH1516_ALE/1841925‑1842104

taagaaaaaatgcttcatggctaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                                                           >  1:3758050‑M1/60‑91 (MQ=255)

tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                                                           >  1:2570952/1‑91 (MQ=255)

tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                                                           <  1:861736/91‑1 (MQ=255)

 gccttggccA‑GGTGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                                                         <  1:2845606‑M2/87‑3 (MQ=255)

 gccttggccA‑GGTGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                                                         <  1:2845583‑M2/87‑3 (MQ=255)

 cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATa                                                                                          <  1:2845010‑M2/91‑2 (MQ=255)

 cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATa                                                                                          <  1:736717‑M2/91‑2 (MQ=255)

 aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaatgaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAata                                                                                          >  1:3500892‑M1/59‑91 (MQ=255)

  agaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAatat                                                                                         >  1:705999‑M1/58‑91 (MQ=255)

  agaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAatat                                                                                         >  1:1919270‑M1/58‑91 (MQ=255)

  aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                                                         >  1:221677‑M2/1‑89 (MQ=255)

  aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                                                         >  1:897918‑M2/1‑89 (MQ=255)

   ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatg                                                                                        >  1:2309187‑M2/1‑88 (MQ=255)

   ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatg                                                                                        <  1:180207‑M2/91‑4 (MQ=255)

    cTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatga                                                                                       <  1:2238410‑M2/91‑5 (MQ=255)

      ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagt                                                                                     >  1:1054368‑M2/1‑85 (MQ=255)

            ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                                               >  1:3632174‑M2/1‑79 (MQ=255)

            ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                                               <  1:3084760‑M2/91‑13 (MQ=255)

            ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                                               >  1:3632016‑M2/1‑79 (MQ=255)

            ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                                               <  1:1514211‑M2/91‑13 (MQ=255)

             gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctct                                                                              <  1:3059804‑M2/91‑14 (MQ=255)

             gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctct                                                                              <  1:3059564‑M2/91‑14 (MQ=255)

             gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATaagagtaggctct                                                                              <  1:144134‑M2/91‑14 (MQ=255)

               gATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTaa                                                                            <  1:3663118/91‑1 (MQ=255)

               gATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTaa                                                                            <  1:3664839/91‑1 (MQ=255)

                  agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                                         >  1:2145555/1‑91 (MQ=255)

                   gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                                        <  1:3873385/91‑1 (MQ=255)

                    agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                                       >  1:932918/1‑91 (MQ=255)

                    agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                                       <  1:1494488/91‑1 (MQ=255)

                    agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                                       <  1:509406/91‑1 (MQ=255)

                     gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                      <  1:102881/91‑1 (MQ=255)

                     gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                      >  1:1597521/1‑91 (MQ=255)

                     gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                      <  1:756899/91‑1 (MQ=255)

                     gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                      <  1:168764/91‑1 (MQ=255)

                     gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                      <  1:168578/91‑1 (MQ=255)

                         tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                                  >  1:2011997/1‑91 (MQ=255)

                           tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa                                                                <  1:712799/91‑1 (MQ=255)

                             tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                                              >  1:2907843/1‑91 (MQ=255)

                              aGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGc                                                             <  1:3014296/91‑1 (MQ=255)

                               gATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCa                                                            >  1:1360666/1‑91 (MQ=255)

                                  aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                         <  1:989164/91‑1 (MQ=255)

                                  aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                         <  1:1577230/91‑1 (MQ=255)

                                  aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                         <  1:1576919/91‑1 (MQ=255)

                                  aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                         <  1:2057478/91‑1 (MQ=255)

                                  aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                         <  1:2057640/91‑1 (MQ=255)

                                      tACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                     >  1:975986/1‑91 (MQ=255)

                                      tACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                     >  1:641665/1‑91 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                  >  1:3126516/1‑91 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                  >  1:1390647/1‑91 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                  <  1:1928760/91‑1 (MQ=255)

                                          gacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat                                                 <  1:3898800/91‑1 (MQ=255)

                                           acagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttatt                                                >  1:2504840/1‑91 (MQ=255)

                                            cagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTg                                               >  1:2641499/1‑91 (MQ=255)

                                               aaaaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATa                                            >  1:3243296/1‑91 (MQ=255)

                                                 aaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt                                          >  1:3421665/1‑91 (MQ=255)

                                                  aGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                         >  1:1512877/1‑91 (MQ=255)

                                                   gTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTa                                        >  1:2816241/1‑91 (MQ=255)

                                                    tACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                                       >  1:3712715/1‑91 (MQ=255)

                                                      cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                     >  1:2792712/1‑91 (MQ=255)

                                                      cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                     >  1:708847/1‑91 (MQ=255)

                                                        ttAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                                   <  1:1039443/91‑1 (MQ=255)

                                                        ttAAGAGCCTACGCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAATCAt                                   >  1:3206613/1‑91 (MQ=255)

                                                        ttAAGAGCCTACGCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAGCAt                                   >  1:3206649/1‑91 (MQ=255)

                                                            GAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                               >  1:3911569‑M1/1‑91 (MQ=255)

                                                            GAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                               >  1:3911413‑M1/1‑91 (MQ=255)

                                                             AGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                              <  1:129146‑M1/91‑1 (MQ=255)

                                                             AGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                              >  1:506845‑M1/1‑91 (MQ=255)

                                                             AGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTACGCAATTATATTTATTGATAGTTAACCATGAAGt                              <  1:3396645‑M1/91‑1 (MQ=255)

                                                                CTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt                           <  1:1687775‑M1/91‑1 (MQ=255)

                                                                CTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt                           <  1:3347931‑M1/91‑1 (MQ=255)

                                                                  ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                         <  1:1372573‑M1/91‑1 (MQ=255)

                                                                  ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                         <  1:1372845‑M1/91‑1 (MQ=255)

                                                                  ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                         <  1:3752114‑M1/91‑1 (MQ=255)

                                                                    TCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt                       <  1:3391373‑M1/91‑1 (MQ=255)

                                                                     CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                      <  1:1922726‑M1/91‑1 (MQ=255)

                                                                     CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                      >  1:1344068‑M1/1‑91 (MQ=255)

                                                                     CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                      >  1:944542‑M1/1‑91 (MQ=255)

                                                                     CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                      <  1:1922115‑M1/91‑1 (MQ=255)

                                                                      aT‑TACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggt                     <  1:2037411‑M2/91‑71 (MQ=255)

                                                                      aT‑TACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggt                     <  1:1598754‑M2/91‑71 (MQ=255)

                                                                      AT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                     >  1:80417‑M1/1‑91 (MQ=255)

                                                                      AT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                     >  1:2052028‑M1/1‑91 (MQ=255)

                                                                       t‑tACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtg                    <  1:253513‑M2/91‑72 (MQ=255)

                                                                         tACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtga                   <  1:1466131‑M2/91‑73 (MQ=255)

                                                                         tACATTCTTAGGAATGAATatgagtaggctctaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtgat                   <  1:829814‑M2/91‑73 (MQ=255)

                                                                         tACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                   >  1:4091148/1‑91 (MQ=255)

                                                                         tACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                   <  1:2994934/91‑1 (MQ=255)

                                                                          aCATTCTTAGGCATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtgat                  <  1:2385433‑M2/91‑74 (MQ=255)

                                                                          aCATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTAc                  >  1:2580294/1‑91 (MQ=255)

                                                                            aTTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACcg                >  1:680202/1‑91 (MQ=255)

                                                                             ttCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACcgc               <  1:2201919/91‑1 (MQ=255)

                                                                               cTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcga             <  1:2200524/91‑1 (MQ=255)

                                                                                ttAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgac            >  1:3717679/1‑91 (MQ=255)

                                                                                  aGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacga          >  1:1413075/1‑91 (MQ=255)

                                                                                     aatgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaata       >  1:1489399/1‑91 (MQ=255)

                                                                                      atgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataa      <  1:2456176/91‑1 (MQ=255)

                                                                                      atgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataa      >  1:519754/1‑91 (MQ=255)

                                                                                      atgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataa      >  1:398014/1‑91 (MQ=255)

                                                                                         aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg   >  1:1583818/1‑91 (MQ=255)

                                                                                         aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg   <  1:3623686/91‑1 (MQ=255)

TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGT  >  USA300TCH1516_ALE/1841925‑1842104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.