BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1841996	64 (0.650)	12 (0.150)	7/134	NT	17.4%	intergenic (+36/+58)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1842015	60 (0.730)	12 (0.150)	7/134	NT	17.4%	intergenic (+55/+39)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 166 total aligned reads displayed.

AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTT  >  USA300TCH1516_ALE/1841906‑1842086

 aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt‑t                                                                                           <  1:739522/91‑1 (MQ=255)

 aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt‑t                                                                                           <  1:607423/91‑1 (MQ=255)

     gATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACAt                                                                                       >  1:2748128/1‑91 (MQ=255)

     gATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACAt                                                                                       >  1:1839716/1‑91 (MQ=255)

         aGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCtt                                                                                   >  1:428228/1‑91 (MQ=255)

           aaCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAg                                                                                 >  1:2496228/1‑91 (MQ=255)

            aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaa                                                                                 <  1:2303819‑M1/91‑13 (MQ=255)

            aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAgg                                                                                <  1:3545187/91‑1 (MQ=255)

              gTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaa                                                                              <  1:1189439/91‑1 (MQ=255)

                  gtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGgaatgaa                                                                          >  1:1418068‑M1/61‑91 (MQ=255)

                  aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgt                                                                           <  1:1546530‑M1/91‑19 (MQ=255)

                  aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATT‑AGAGCCTACTCATattcattcctaagaatgta                                                                          <  1:829814‑M1/91‑20 (MQ=255)

                   taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                                         >  1:3059851‑M1/60‑91 (MQ=255)

                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                                          <  1:1466108‑M1/91‑20 (MQ=255)

                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                                          <  1:1466131‑M1/91‑20 (MQ=255)

                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                                         >  1:730468/1‑91 (MQ=255)

                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                                         >  1:1793633/1‑91 (MQ=255)

                    gccttggccA‑GGTGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                                       <  1:2845606‑M2/87‑3 (MQ=255)

                    cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaa                                                                         <  1:253700‑M1/91‑21 (MQ=255)

                    cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaa                                                                         <  1:253513‑M1/91‑21 (MQ=255)

                    cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATa                                                                        <  1:2845010‑M2/91‑2 (MQ=255)

                     agaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAatat                                                                       >  1:705999‑M1/58‑91 (MQ=255)

                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaat                                                                        <  1:1598754‑M1/91‑22 (MQ=255)

                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                                       >  1:897918‑M2/1‑89 (MQ=255)

                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                                       >  1:221677‑M2/1‑89 (MQ=255)

                      ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg                                                                       <  1:866241‑M1/91‑23 (MQ=255)

                      ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatg                                                                      >  1:2309187‑M2/1‑88 (MQ=255)

                       cTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatga                                                                     <  1:2238410‑M2/91‑5 (MQ=255)

                       aaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGa                                                                     >  1:3155689‑M1/56‑91 (MQ=255)

                        tGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgag                                                                    <  1:1969057‑M2/91‑6 (MQ=255)

                         ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagt                                                                   >  1:1054368‑M2/1‑85 (MQ=255)

                          gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagta                                                                  <  1:2995958‑M2/91‑8 (MQ=255)

                          gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagta                                                                  <  1:2038044‑M2/91‑8 (MQ=255)

                               ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                             >  1:3632174‑M2/1‑79 (MQ=255)

                               ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                             <  1:3084760‑M2/91‑13 (MQ=255)

                                gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctct                                                            <  1:3059564‑M2/91‑14 (MQ=255)

                                gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctct                                                            <  1:3059804‑M2/91‑14 (MQ=255)

                                  gATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTaa                                                          <  1:3663118/91‑1 (MQ=255)

                                     agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                       >  1:2145555/1‑91 (MQ=255)

                                      gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                      <  1:3873385/91‑1 (MQ=255)

                                       agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                     <  1:509406/91‑1 (MQ=255)

                                       agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                     <  1:1494488/91‑1 (MQ=255)

                                        gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                    <  1:168578/91‑1 (MQ=255)

                                        gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                    <  1:102881/91‑1 (MQ=255)

                                            tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                >  1:2011997/1‑91 (MQ=255)

                                                tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                            >  1:2907843/1‑91 (MQ=255)

                                                 aGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGc                                           <  1:3014296/91‑1 (MQ=255)

                                                  gATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCa                                          >  1:1360666/1‑91 (MQ=255)

                                                     aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                       <  1:989164/91‑1 (MQ=255)

                                                     aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                       <  1:2057640/91‑1 (MQ=255)

                                                     aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                       <  1:1577230/91‑1 (MQ=255)

                                                     aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                       <  1:1580858/91‑1 (MQ=255)

                                                         tACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                   >  1:641665/1‑91 (MQ=255)

                                                          acagacagAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatt                                  >  1:1608059/1‑91 (MQ=255)

                                                            agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                >  1:1390647/1‑91 (MQ=255)

                                                            agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                <  1:1928760/91‑1 (MQ=255)

                                                             gacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat                               <  1:3898800/91‑1 (MQ=255)

                                                               cagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTg                             >  1:2641499/1‑91 (MQ=255)

                                                                  aaaaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATa                          >  1:3243296/1‑91 (MQ=255)

                                                                   aaaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg                         <  1:2472157/91‑1 (MQ=255)

                                                                    aaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt                        >  1:3421665/1‑91 (MQ=255)

                                                                     aGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       >  1:1512877/1‑91 (MQ=255)

                                                                      gTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTa                      >  1:2816241/1‑91 (MQ=255)

                                                                       tACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                     >  1:3712715/1‑91 (MQ=255)

                                                                         cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                   >  1:708847/1‑91 (MQ=255)

                                                                         cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                   >  1:2721031/1‑91 (MQ=255)

                                                                           ttAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                 >  1:972826/1‑91 (MQ=255)

                                                                           ttAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                 <  1:1039443/91‑1 (MQ=255)

                                                                           ttAAGAGCCTACGCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAATCAt                 >  1:3206613/1‑91 (MQ=255)

                                                                              agagCCTACTCTTattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgc               <  1:144134‑M1/91‑79 (MQ=255)

                                                                               gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcc              >  1:3632016‑M1/1‑12 (MQ=255)

                                                                               gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcc              >  1:3632174‑M1/1‑12 (MQ=255)

                                                                               gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcc              <  1:1514211‑M1/91‑80 (MQ=255)

                                                                               GAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg             >  1:3563758‑M1/1‑91 (MQ=255)

                                                                               GAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg             >  1:3911569‑M1/1‑91 (MQ=255)

                                                                                agCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcct             <  1:81831‑M1/91‑81 (MQ=255)

                                                                                AGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt            >  1:506969‑M1/1‑91 (MQ=255)

                                                                                 gCCTACTCATtacattcttaggaatgaatatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcctt            >  1:3876064‑M1/1‑10 (MQ=255)

                                                                                  CCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAt          <  1:3926725‑M1/91‑1 (MQ=255)

                                                                                   CTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt         <  1:1687775‑M1/91‑1 (MQ=255)

                                                                                   CTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt         <  1:3347931‑M1/91‑1 (MQ=255)

                                                                                     ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt       <  1:3752173‑M1/91‑1 (MQ=255)

                                                                                     ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt       >  1:1100726‑M1/1‑91 (MQ=255)

                                                                                     ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt       <  1:1372573‑M1/91‑1 (MQ=255)

                                                                                       TCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt     <  1:3684857‑M1/91‑1 (MQ=255)

                                                                                       TCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt     <  1:3391373‑M1/91‑1 (MQ=255)

                                                                                        cATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccagg     <  1:180207‑M1/91‑89 (MQ=255)

                                                                                        cAT‑TACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccagg    <  1:2140827‑M2/91‑70 (MQ=255)

                                                                                        cAT‑TACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccagg    <  1:866241‑M2/91‑70 (MQ=255)

                                                                                        CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc    >  1:944542‑M1/1‑91 (MQ=255)

                                                                                        CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc    >  1:1344068‑M1/1‑91 (MQ=255)

                                                                                        CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc    <  1:1922050‑M1/91‑1 (MQ=255)

                                                                                        CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc    <  1:1922115‑M1/91‑1 (MQ=255)

                                                                                         atattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcacctggccaaggc    <  1:2845583‑M1/91‑90 (MQ=255)

                                                                                         atattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcacctggccaaggc    <  1:2845606‑M1/91‑90 (MQ=255)

                                                                                         aT‑TACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggt   <  1:2037411‑M2/91‑71 (MQ=255)

                                                                                         AT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt   >  1:80417‑M1/1‑91 (MQ=255)

                                                                                         AT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt   >  1:2052028‑M1/1‑91 (MQ=255)

                                                                                          tattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtg   <  1:736717‑M1/91‑91 (MQ=255)

                                                                                          t‑tACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtg  <  1:253700‑M2/91‑72 (MQ=255)

AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTT  >  USA300TCH1516_ALE/1841906‑1842086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.