| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1844661 | 95 (0.970) | 5 (0.060) | 4/142 | NT | 5.1% | intergenic (+58/+145) | mrcA/isdH | Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H |
| ? | USA300TCH1516_ALE | = 1844689 | 101 (1.160) | intergenic (+86/+117) | mrcA/isdH | Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H | |||||
TGATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1844564‑1844661‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagcagtGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCATCAATTAA < USA300TCH1516_ALE/1844689‑1844600 TGATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAA > 1:1101346/1‑91TGATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAA > 1:2437622/1‑91 GATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAAC > 1:2114266/1‑91 GATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAAC > 1:2330030/1‑91 ATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACA > 1:1389697/1‑91 ATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGC > 1:163636/1‑91 TAACTCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAG < 1:3343327/91‑1 TAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTGAGAAATTTTCTAATTGAAAATAATCTTAC < 1:2716276/91‑1 ATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTG < 1:1457686/91‑1 ATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTG < 1:1610267/91‑1 GCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTT < 1:1682036/91‑1 CTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTT < 1:3425772/91‑1 AACAGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCA < 1:3932984/91‑1 ACAGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCAT > 1:1647364/1‑91 ACAGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCAT > 1:1074186/1‑91 AGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCATCA > 1:1605943/1‑91 AGCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCATCA > 1:3139402/1‑91 GCAGTGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCATCAA < 1:994110/91‑1 TGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCATCAATTAA < 1:1131499/91‑1 TGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCATCAATTAA < 1:3847114/91‑1 TGATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1844564‑1844661‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagcagtGAGAAATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTAATATTTGGATTCATTGTTGTGGTTACTTTAAAAAGTGAGCATCAATTAA < USA300TCH1516_ALE/1844689‑1844600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |