BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1844661	95 (0.970)	5 (0.060)	4/142	NT	5.1%	intergenic (+58/+145)	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H
*	?	USA300TCH1516_ALE	= 1844689	101 (1.160)	5 (0.060)	4/142	NT	5.1%	intergenic (+86/+117)	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H

Only 100 of 134 total aligned reads displayed.

TTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTA  >  USA300TCH1516_ALE/1844600‑1844779

ttAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCa                                                                                           <  1:3847114‑M2/91‑2 (MQ=255)

ttAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCa                                                                                           <  1:1131499‑M2/91‑2 (MQ=255)

     tGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCactgct                                                                                      >  1:3139402‑M2/1‑85 (MQ=255)

     tGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCactgct                                                                                      >  1:1605943‑M2/1‑85 (MQ=255)

       aTGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCactgctgt                                                                                    >  1:1074186‑M2/1‑83 (MQ=255)

       aTGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCactgctgt                                                                                    >  1:1647364‑M2/1‑83 (MQ=255)

        tGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCactgctgtt                                                                                   <  1:3932984‑M2/91‑10 (MQ=255)

         gCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTc                                                                                  >  1:4032054/1‑91 (MQ=255)

         gCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTc                                                                                  <  1:337419/91‑1 (MQ=255)

           tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                <  1:703439/91‑1 (MQ=255)

           tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                <  1:282803/91‑1 (MQ=255)

           tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                <  1:1604710/91‑1 (MQ=255)

                ttttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttat                                                                           >  1:1549116/1‑91 (MQ=255)

                 tttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttatt                                                                          <  1:3653975/91‑1 (MQ=255)

                  ttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattt                                                                         <  1:2679360/91‑1 (MQ=255)

                   tAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattta                                                                        <  1:3933470/91‑1 (MQ=255)

                    aaaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAc                                                                       >  1:1398902/1‑91 (MQ=255)

                    aaaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAc                                                                       >  1:2299779/1‑91 (MQ=255)

                    aaaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAc                                                                       >  1:560038/1‑91 (MQ=255)

                     aaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAct                                                                      >  1:2753383/1‑91 (MQ=255)

                     aaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAct                                                                      <  1:1905668/91‑1 (MQ=255)

                      aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                                                     <  1:2444719/91‑1 (MQ=255)

                      aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                                                     <  1:3134464/91‑1 (MQ=255)

                       gTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActct                                                                    <  1:3812637/91‑1 (MQ=255)

                         aaCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaa                                                                  >  1:658600/1‑91 (MQ=255)

                         aaCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaa                                                                  >  1:552960/1‑91 (MQ=255)

                           ccACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAg                                                                >  1:2027387/1‑91 (MQ=255)

                           ccACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAg                                                                <  1:42954/91‑1 (MQ=255)

                            cacaACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAgg                                                               <  1:1322394/91‑1 (MQ=255)

                            cacaACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAgg                                                               <  1:1646575/91‑1 (MQ=255)

                             acaacaATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGa                                                              >  1:1341171/1‑91 (MQ=255)

                             acaacaATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTGCTCACTGCTGTTCTTTTTATTTACTCTAAAGGa                                                              >  1:3683706/1‑91 (MQ=255)

                               aacaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGaaa                                                            <  1:1801512/91‑1 (MQ=255)

                               aacaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGaaa                                                            <  1:1463032/91‑1 (MQ=255)

                                acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                           <  1:3474934/91‑1 (MQ=255)

                                acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                           <  1:3983539/91‑1 (MQ=255)

                                acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                           <  1:3475754/91‑1 (MQ=255)

                                 caaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGc                                                          >  1:2338062/1‑91 (MQ=255)

                                   aTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCa                                                        >  1:3360970/1‑91 (MQ=255)

                                   aTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCa                                                        <  1:286339/91‑1 (MQ=255)

                                    tGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATCTCGCACCGCCGTTCTCCTTATTTACTCTAAAGGAAAGCCAt                                                       >  1:1056153/1‑91 (MQ=25)

                                      aaTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTa                                                     >  1:262023/1‑91 (MQ=255)

                                         ccAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAAc                                                  <  1:4074269/91‑1 (MQ=255)

                                           aaaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACca                                                >  1:926992/1‑91 (MQ=255)

                                           aaaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACca                                                >  1:372961/1‑91 (MQ=255)

                                              tatTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatc                                             <  1:1738932/91‑1 (MQ=255)

                                                  aaaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTCTTTACTCTAAAGGAAAGCCATTAAACCAATCAATa                                         >  1:3921207/1‑91 (MQ=255)

                                                   aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCactgctgtttttaatatttggattcattgttgtggttactttaaaaagtgag                                        <  1:3425772‑M2/91‑53 (MQ=255)

                                                   aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg                                        >  1:303122/1‑91 (MQ=255)

                                                   aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg                                        <  1:3784464/91‑1 (MQ=255)

                                                   aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg                                        >  1:2543501/1‑91 (MQ=255)

                                                    aaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCactgctgtttttaatatttggattcattgttgtggttactttaaaaagtgagc                                       <  1:1682036‑M2/91‑54 (MQ=255)

                                                    aaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGt                                       >  1:3704450/1‑91 (MQ=255)

                                                      aCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGttt                                     >  1:2908043/1‑91 (MQ=255)

                                                      aCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGttt                                     >  1:2908304/1‑91 (MQ=255)

                                                        agcagTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtat                                   <  1:325151/91‑1 (MQ=255)

                                                        agcagTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtat                                   <  1:796394/91‑1 (MQ=255)

                                                        agcagTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtat                                   >  1:2603401/1‑91 (MQ=255)

                                                         gcagTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtata                                  >  1:1014716/1‑91 (MQ=255)

                                                         gcagTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtata                                  >  1:1014402/1‑91 (MQ=255)

                                                          cagTAAGATTATTTTCAATTAGAAAATTTCTCactgctgtttttaatatttggattcattgttgtggttactttaaaaagtgagcatcaat                                 <  1:1610267‑M2/91‑60 (MQ=255)

                                                          cagTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATaa                                 >  1:1370231/1‑91 (MQ=255)

                                                           agTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATaaa                                >  1:1903451/1‑91 (MQ=255)

                                                           agTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATaaa                                >  1:87734/1‑91 (MQ=255)

                                                            gTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaat                               >  1:3656517/1‑91 (MQ=255)

                                                             tAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaatt                              <  1:2164055/91‑1 (MQ=255)

                                                              aaGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaatta                             <  1:526643/91‑1 (MQ=255)

                                                               aGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaa                            >  1:3078145/1‑91 (MQ=255)

                                                               aGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaa                            <  1:1762269/91‑1 (MQ=255)

                                                                gATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaat                           <  1:190411/91‑1 (MQ=255)

                                                                 attattTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaatt                          >  1:1591326/1‑91 (MQ=255)

                                                                    attTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCt                       >  1:3250957/1‑91 (MQ=255)

                                                                    attTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCt                       >  1:2538733/1‑91 (MQ=255)

                                                                     ttttCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCtt                      <  1:2904077/91‑1 (MQ=255)

                                                                     ttttCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCtt                      >  1:1949258/1‑91 (MQ=255)

                                                                      tttCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCttt                     >  1:2958542/1‑91 (MQ=255)

                                                                      tttCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCttt                     <  1:2858472/91‑1 (MQ=255)

                                                                          aaTTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAACGCCATTAAACCAATCAATAGTTTATAAATAAATTGCTTTcaca                 >  1:4145950/1‑91 (MQ=255)

                                                                          aaTTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTcaca                 >  1:76/1‑91 (MQ=255)

                                                                          aaTTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTcaca                 <  1:2103965/91‑1 (MQ=255)

                                                                           aTTAGAAAATTTCTCACTGCTGTTCCTTTTATTTACTCTAAAGGAAAGCCATTAAACGAATCAATAGTTTATAAATTAATTGCTTTCACAt                >  1:3394638/1‑91 (MQ=255)

                                                                            ttAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACAtt               <  1:798756/91‑1 (MQ=255)

                                                                             tAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTg              <  1:2756651/91‑1 (MQ=255)

                                                                             tAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTg              <  1:212958/91‑1 (MQ=255)

                                                                             tAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTg              <  1:2756736/91‑1 (MQ=255)

                                                                               gAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTc            >  1:2885808/1‑91 (MQ=255)

                                                                               gAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTc            >  1:2886097/1‑91 (MQ=255)

                                                                               ctaaaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTc            <  1:2027523/89‑1 (MQ=255)

                                                                                 aaaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTa          <  1:4125355/91‑1 (MQ=255)

                                                                                  aaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTAc         <  1:2998771/91‑1 (MQ=255)

                                                                                  aaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTAc         <  1:391354/91‑1 (MQ=255)

                                                                                   aTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACa        >  1:3745426/1‑91 (MQ=255)

                                                                                   aTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACa        >  1:3841315/1‑91 (MQ=255)

                                                                                      tctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAg     <  1:975566/91‑1 (MQ=255)

                                                                                       ctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGt    <  1:3200077/91‑1 (MQ=255)

                                                                                       ctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGt    <  1:1384928/91‑1 (MQ=255)

                                                                                       ctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGt    <  1:1122018/91‑1 (MQ=255)

                                                                                        tcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGtt   <  1:2371929/91‑1 (MQ=255)

                                                                                         cACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTa  >  1:76958/1‑91 (MQ=255)

                                                                                         cACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTa  >  1:1300943/1‑91 (MQ=255)

TTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTA  >  USA300TCH1516_ALE/1844600‑1844779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.