| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1850072 = | 103 (1.050) | 8 (0.080) | 4/154 | NT | 8.0% | coding (1531/1707 nt) | acsA_1 | Acetyl‑coenzyme A synthetase |
| ? | USA300TCH1516_ALE | 1850111 = | 86 (0.910) | coding (1492/1707 nt) | acsA_1 | Acetyl‑coenzyme A synthetase | |||||
CCGAAGCAGGAATTATTGGTAAACCTGATCCGGTTCGCGGTGAAATAATTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1850164‑1850072‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT > USA300TCH1516_ALE/1850111‑1850200 CCGAAGCAGGAATTATTGGTAAACCTGATCCGGTTCGCGGTGAAATAATTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGA < 1:989993/91‑1CCGAAGCAGGAATTATTGGTAAACCTGATCCGGTTCGCGGTGAAATAATTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGA < 1:2293134/91‑1 CGAAGCAGGAATTATTGGTAAACCTGATCCGGTTCGCGGTGAAATAATTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGAC < 1:4050192/91‑1 CGAAGCAGGAATTATTGGTAAACCTGATCCGGTTCGCGGTGAAATAATTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGAC > 1:767019/1‑91 ATTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTC > 1:4022345/1‑91 TTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCC > 1:405026/1‑91 TTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCC > 1:405045/1‑91 TTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCC > 1:405120/1‑91 AGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGC > 1:1422444/1‑91 AGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGC > 1:1422364/1‑91 TTGCACTGAGAAAAGGATATGAACCAACAGACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAAC > 1:2988243/1‑91 TTGCACTGAGAAAAGGATATGAACCAACAGACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAAC > 1:2988627/1‑91 GCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT < 1:2648160/91‑1 GCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT < 1:1258478/91‑1 GCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT < 1:465917/91‑1 GCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT < 1:466250/91‑1 GCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT > 1:905010/1‑91 GCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT < 1:1258797/91‑1 CCGAAGCAGGAATTATTGGTAAACCTGATCCGGTTCGCGGTGAAATAATTAAGGCGTTTGTTGCACTGAGAAAAGGATATGAACCAACAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1850164‑1850072‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT > USA300TCH1516_ALE/1850111‑1850200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |