BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1850072 =	103 (1.050)	8 (0.080)	4/154	NT	8.0%	coding (1531/1707 nt)	acsA_1	Acetyl‑coenzyme A synthetase
*	?	USA300TCH1516_ALE	1850111 =	86 (0.910)	8 (0.080)	4/154	NT	8.0%	coding (1492/1707 nt)	acsA_1	Acetyl‑coenzyme A synthetase

Only 100 of 121 total aligned reads displayed.

CATGTGCCGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT  >  USA300TCH1516_ALE/1850021‑1850200

cATGTGCCGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGc                                                                                           <  1:1751/91‑1 (MQ=255)

cATGTGCCGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGc                                                                                           <  1:456062/91‑1 (MQ=255)

cATGTGCCGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGc                                                                                           <  1:1585793/91‑1 (MQ=255)

 aTGTGCCGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGcc                                                                                          <  1:1906999/91‑1 (MQ=255)

  gcaggaattattggtaaacctgatccggttcgcggtgaaataattaaggCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCt                                                                                         >  1:1422444‑M1/50‑91 (MQ=255)

  gcaggaattattggtaaacctgatccggttcgcggtgaaataattaaggCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCt                                                                                         >  1:1422364‑M1/50‑91 (MQ=255)

    tgCCGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTa                                                                                       <  1:2103244/91‑1 (MQ=255)

     ggaattattggtaaacctgatccggttcgcggtgaaataattaaggCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTaa                                                                                      >  1:405026‑M1/47‑91 (MQ=255)

     ggaattattggtaaacctgatccggttcgcggtgaaataattaaggCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTaa                                                                                      >  1:405045‑M1/47‑91 (MQ=255)

     ggaattattggtaaacctgatccggttcgcggtgaaataattaaggCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTaa                                                                                      >  1:405120‑M1/47‑91 (MQ=255)

     gCCGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTaa                                                                                      <  1:647849/91‑1 (MQ=255)

      ccGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAat                                                                                     <  1:2789235/91‑1 (MQ=255)

      ccGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAat                                                                                     >  1:2305957/1‑91 (MQ=255)

        gACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAatta                                                                                   <  1:1033572/91‑1 (MQ=255)

        gACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAatta                                                                                   >  1:2030595/1‑91 (MQ=255)

        gACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAatta                                                                                   >  1:1223985/1‑91 (MQ=255)

         aCAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAattat                                                                                  <  1:1224696/91‑1 (MQ=255)

         aCAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAattat                                                                                  <  1:1223739/91‑1 (MQ=255)

          cAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAattatt                                                                                 >  1:1890491/1‑91 (MQ=255)

          cAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAattatt                                                                                 >  1:1890354/1‑91 (MQ=255)

          cAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAattatt                                                                                 >  1:3375079/1‑91 (MQ=255)

               cttcttTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCAcc                                                                            >  1:1576988/1‑91 (MQ=255)

                 tcttTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACcgc                                                                          >  1:1674379/1‑91 (MQ=255)

                  cttTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACcgcg                                                                         >  1:2025761/1‑91 (MQ=255)

                   tttAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGa                                                                        <  1:125981/91‑1 (MQ=255)

                     tAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAAc                                                                      <  1:1933293/91‑1 (MQ=255)

                     tAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAAc                                                                      <  1:2542820/91‑1 (MQ=255)

                      aaCAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAAcc                                                                     >  1:2881778/1‑91 (MQ=255)

                       aCAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCg                                                                    <  1:778931/91‑1 (MQ=255)

                       aCAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCg                                                                    <  1:4052495/91‑1 (MQ=255)

                       aCAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCg                                                                    <  1:1348585/91‑1 (MQ=255)

                          aaTATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGAt                                                                 >  1:1935882/1‑91 (MQ=255)

                          aaTATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGAt                                                                 <  1:1740639/91‑1 (MQ=255)

                          aaTATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGAt                                                                 <  1:641022/91‑1 (MQ=255)

                           atatACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATc                                                                <  1:3319965/91‑1 (MQ=255)

                           atatACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATc                                                                <  1:3728103/91‑1 (MQ=255)

                             ataCGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAg                                                              <  1:3157241/91‑1 (MQ=255)

                             ataCGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAg                                                              >  1:4038987/1‑91 (MQ=255)

                             ataCGAATTTCTTCTTTTAATTCGTCTGTTGGATCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAg                                                              >  1:2998710/1‑91 (MQ=255)

                              taCGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAgg                                                             <  1:1271560/91‑1 (MQ=255)

                              taCGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAgg                                                             <  1:1271971/91‑1 (MQ=255)

                               aCGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGt                                                            >  1:2448850/1‑91 (MQ=255)

                               aCGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGt                                                            >  1:1992761/1‑91 (MQ=255)

                                cGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGtt                                                           <  1:2054059/91‑1 (MQ=255)

                                 gAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGttt                                                          >  1:2816378/1‑91 (MQ=255)

                                 gAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGttt                                                          >  1:2816648/1‑91 (MQ=255)

                                 gAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGttt                                                          >  1:155722/1‑91 (MQ=255)

                                 gAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGttt                                                          >  1:157209/1‑91 (MQ=255)

                                  aaTTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTa                                                         >  1:3431486/1‑91 (MQ=255)

                                  aaTTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTa                                                         >  1:4092178/1‑91 (MQ=255)

                                   aTTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTAc                                                        >  1:628839/1‑91 (MQ=255)

                                     ttcttcTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCa                                                      <  1:4006967/91‑1 (MQ=255)

                                      tcttctTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCaa                                                     <  1:408847/91‑1 (MQ=255)

                                       cttcttTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCaat                                                    <  1:1056360/91‑1 (MQ=255)

                                       cttcttTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCaat                                                    <  1:1056401/91‑1 (MQ=255)

                                          cttTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCaataat                                                 >  1:2974601/1‑91 (MQ=255)

                                            tttAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTc                                               <  1:1074314/91‑1 (MQ=255)

                                            attaaggcgtttgttgcactgagaaaaggatatgaaccaacagacgCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTc                                               >  1:4022345‑M2/47‑91 (MQ=255)

                                             ttaaggcgtttgttgcactgagaaaaggatatgaaccaacagacgCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTcc                                              >  1:405120‑M2/46‑91 (MQ=255)

                                             ttaaggcgtttgttgcactgagaaaaggatatgaaccaacagacgCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTcc                                              >  1:405045‑M2/46‑91 (MQ=255)

                                                aggcgtttgttgcactgagaaaaggatatgaaccaacagacgCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGc                                           >  1:1422364‑M2/43‑91 (MQ=255)

                                                aggcgtttgttgcactgagaaaaggatatgaaccaacagacgCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGc                                           >  1:1422444‑M2/43‑91 (MQ=255)

                                                 ttCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCt                                          >  1:1218729/1‑91 (MQ=255)

                                                 ttCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCt                                          >  1:1218914/1‑91 (MQ=255)

                                                    GTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCg                                       <  1:4050192‑M1/91‑1 (MQ=255)

                                                     TCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCgg                                      <  1:2293134‑M1/91‑1 (MQ=255)

                                                      cTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGc                                     >  1:805428/1‑91 (MQ=255)

                                                      cTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGc                                     >  1:1091949/1‑91 (MQ=255)

                                                      cTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGc                                     <  1:388561/91‑1 (MQ=255)

                                                         ttgcactgagaaaaggatatgaaccaacagacgCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAAc                                  >  1:2988243‑M2/34‑91 (MQ=255)

                                                           ggTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTg                                >  1:2036665/1‑91 (MQ=255)

                                                           ggTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTg                                <  1:1617312/91‑1 (MQ=255)

                                                             ttCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCt                              <  1:2251708/91‑1 (MQ=255)

                                                             ttCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCt                              <  1:3473998/91‑1 (MQ=255)

                                                             ttCATATCCTTTCCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCt                              >  1:3178790/1‑91 (MQ=255)

                                                             ttCATATCCTTTACTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCt                              >  1:3178412/1‑91 (MQ=255)

                                                               cATGTCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTc                            <  1:3736648/91‑1 (MQ=255)

                                                               cATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGGGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTc                            <  1:3307075/91‑1 (MQ=255)

                                                                 tatCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCgt                          >  1:2537632/1‑91 (MQ=255)

                                                                   tCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCgtgt                        <  1:801451/91‑1 (MQ=255)

                                                                     cTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTc                      >  1:3691741/1‑91 (MQ=255)

                                                                     cTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTc                      >  1:3691740/1‑91 (MQ=255)

                                                                     cTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTc                      >  1:3691527/1‑91 (MQ=255)

                                                                      ttttCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCa                     >  1:726388/1‑91 (MQ=255)

                                                                       tttCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCaa                    <  1:3711531/91‑1 (MQ=255)

                                                                       tttCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCaa                    <  1:3711463/91‑1 (MQ=255)

                                                                         tctcAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAAcc                  >  1:753272/1‑91 (MQ=255)

                                                                           tcAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCaa                <  1:3109431/91‑1 (MQ=255)

                                                                            cAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAAt               >  1:1542759/1‑91 (MQ=255)

                                                                                 caacaaACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGa          >  1:1286554/1‑91 (MQ=255)

                                                                                    caaACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTc       <  1:357062/91‑1 (MQ=255)

                                                                                    caaACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTc       <  1:357158/91‑1 (MQ=255)

                                                                                    caaACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTc       <  1:3913834/91‑1 (MQ=255)

                                                                                      aaCGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCaa     <  1:3275716/91‑1 (MQ=255)

                                                                                      aaCGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCaa     <  1:3275667/91‑1 (MQ=255)

                                                                                         gCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCt  >  1:905010‑M2/2‑91 (MQ=255)

                                                                                         gCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCt  <  1:466250‑M2/90‑1 (MQ=255)

                                                                                         gCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCt  <  1:465917‑M2/90‑1 (MQ=255)

                                                                                         gCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCt  <  1:1258797‑M2/90‑1 (MQ=255)

                                                                                         gCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCt  <  1:2648160‑M2/90‑1 (MQ=255)

CATGTGCCGACAAACCTTCTTTAACAAATATACGAATTTCTTCTTTTAATTCGTCTGTTGGTTCATATCCTTTTCTCAGTGCAACAAACGCCTTAATTATTTCACCGCGAACCGGATCAGGTTTACCAATAATTCCTGCTTCGGCAACTGCTTCGTGTTCAACCAATTTAGACTCAACCT  >  USA300TCH1516_ALE/1850021‑1850200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.