| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1868935 = | 112 (1.140) | 17 (0.190) | 11/142 | NT | 16.5% | intergenic (‑342/+128) | ytnP/trmB | putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase |
| ? | USA300TCH1516_ALE | 1868982 = | 73 (0.840) | intergenic (‑389/+81) | ytnP/trmB | putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase | |||||
TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1869033‑1868935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTG > USA300TCH1516_ALE/1868982‑1869071 TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG < 1:401020/91‑1TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTGTCATCTG > 1:2075301/1‑91 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 1:3906585/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT > 1:667232/1‑91 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT > 1:3718726/1‑91 ATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTC > 1:16131/1‑91 TAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCC > 1:2830920/1‑91 AAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCG > 1:4005670/1‑91 TGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAACTCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT > 1:4138995/1‑91 TGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT < 1:388263/91‑1 TGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT > 1:2157823/1‑91 TGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT < 1:387427/91‑1 TGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT < 1:386546/91‑1 gtgTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT < 1:4091811/88‑1 GTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT < 1:2620994/91‑1 TCTATAATAAATAGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTAC > 1:3199794/1‑91 CTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCCTCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACG > 1:3597171/1‑91 CGGACTGATGGAGAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTT > 1:3175043/1‑91 CGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTT > 1:3859637/1‑91 ACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATG > 1:36777/1‑91 ACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATG > 1:1864011/1‑91 CTGAGGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGA > 1:3279502/1‑91 GATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATT > 1:112161/1‑91 GATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATT > 1:136604/1‑91 ATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTG > 1:2828583/1‑91 ATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTG > 1:23295/1‑91 TGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGT > 1:2145892/1‑91 GGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTA > 1:53732/1‑91 GAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAT > 1:374302/1‑91 GAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAT > 1:835970/1‑91 GAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAT > 1:2903551/1‑91 AAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACATTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATG > 1:127035/1‑91 GTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTC > 1:3563015/1‑91 GTCCGATTTATTATAGAACCGTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTC < 1:861391/91‑1 GTCAGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTC < 1:3343342/91‑1 TCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCT < 1:3575741/91‑1 TCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCT > 1:1511767/1‑91 TTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTT > 1:2600777/1‑91 TATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTG < 1:4081153/91‑1 TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1869033‑1868935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTG > USA300TCH1516_ALE/1868982‑1869071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |