| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1870532 = | 77 (0.780) | 14 (0.160) | 8/144 | NT | 18.1% | intergenic (‑19/+531) | srkA/dat | Stress response kinase A/D‑alanine aminotransferase |
| ? | USA300TCH1516_ALE | 1870584 = | 57 (0.640) | intergenic (‑71/+479) | srkA/dat | Stress response kinase A/D‑alanine aminotransferase | |||||
CAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1870627‑1870532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctaattTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGT > USA300TCH1516_ALE/1870584‑1870673 CAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTC > 1:3608251/1‑91CAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTC < 1:3464874/91‑1CAATAATTATCTGGACATAATATTTATACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTC < 1:3872609/91‑1 TAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAA > 1:426349/1‑91 TAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTCCTAGAGCCAT‑T‑TTCTAA > 1:3547177/1‑91 GTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCA > 1:1548631/1‑91 AATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAAT > 1:2453219/1‑91 ATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATT > 1:63579/1‑91 ATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATT > 1:3712414/1‑91 ATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATT > 1:1431294/1‑91 ATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATT > 1:1431829/1‑91 TTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAAT > 1:1228420/1‑91 TTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTA > 1:2091733/1‑91 TTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTA > 1:1422407/1‑91 GGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCT > 1:1105405/1‑91 GCTCTTGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCC > 1:2682330/1‑91 TGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAAC > 1:2435214/1‑91 AAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAA > 1:3210758/1‑91 CTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTAC > 1:417065/1‑91 TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTT > 1:1457413/1‑91 TAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAA < 1:1098310/91‑1 AATTTATAACACCATACTGGTACCAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAAT > 1:1294503/1‑91 AATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAAT > 1:446515/1‑91 ATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATC < 1:2977396/91‑1 TTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGT < 1:2338665/91‑1 TTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGT < 1:1710151/91‑1 CAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1870627‑1870532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctaattTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGT > USA300TCH1516_ALE/1870584‑1870673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |