| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1873582 = | 112 (1.140) | 8 (0.090) | 6/144 | NT | 8.0% | intergenic (‑258/+492) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1873645 = | 84 (0.950) | intergenic (‑321/+429) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
TTATTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1873679‑1873582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccccAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTC > USA300TCH1516_ALE/1873645‑1873733 TTATTGAAAGCTAACTATTGGCCAGCTTCTATGATGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTG < 1:3683735/91‑1 TATTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGG < 1:849452/91‑1 TATTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGG > 1:1001255/1‑91 TTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGTATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGG < 1:3602190/91‑1 TTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGG < 1:1142283/91‑1 TGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGC > 1:793276/1‑91 TGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGC > 1:3027241/1‑91 GAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCC < 1:1605395/91‑1 AAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCC < 1:1043729/91‑1 AAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCC < 1:1718956/91‑1 GCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCGACATAGAAGCTGGTCAATAGTTAGCTTTCA > 1:2653492/1‑91 cccaCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAAT > 1:1872638/5‑91 cccaCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAAT > 1:1869356/5‑91 CCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAAT > 1:3513748/1‑91 CCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATA > 1:972222/1‑91 CGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA > 1:782608/1‑91 GCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAAT > 1:2648665/1‑91 CAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGT > 1:2516821/1‑91 GGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCA > 1:1747513/1‑91 GGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCA > 1:1747496/1‑91 GCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCT > 1:234125/1‑91 CCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTT > 1:1289522/1‑91 CCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTC > 1:3260863/1‑91 CCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTC < 1:393651/91‑1 CCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTC > 1:757399/1‑91 CCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTC > 1:758535/1‑91 TTATTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1873679‑1873582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccccAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTC > USA300TCH1516_ALE/1873645‑1873733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |