| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1873582 = | 112 (1.140) | 8 (0.090) | 6/144 | NT | 8.0% | intergenic (‑258/+492) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1873645 = | 84 (0.950) | intergenic (‑321/+429) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
Only 100 of 159 total aligned reads displayed.
ATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTT > USA300TCH1516_ALE/1873492‑1873672 | atttctttatcttttcgaaattctctgtgttggggcccttaccccaacttgcacattattgaaagctgactattggccagcttctgtgttg > 1:834827‑M1/91‑91 (MQ=255)atttctttatcttttcgaaattctctgtgttggggcccttaccccaacttgcacattattgaaagctgactattggccagcttctgtgttg > 1:834968‑M1/91‑91 (MQ=255)aTACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCg < 1:1487657/91‑1 (MQ=255) tttctttatcttttcgaaattctctgtgttggggcccttaccccaacttgcacattattgaaagctgactattggccagcttctgtgttgg < 1:1956788‑M1/2‑1 (MQ=255) gaaagctgactattggccagcttctgtgttggggcccttaccccaacttgcacattattgaaagctaactattggccagcttctatgttgg > 1:3260863‑M1/90‑91 (MQ=255) gaaagctgactattggccagcttctgtgttggggcccttaccccaacttgcacattattgaaagctaactattggccagcttctatgttgg < 1:393651‑M1/2‑1 (MQ=255) gaaagctgactattggccagcttctgtgttggggcccttaccccaacttgcacattattgaaagctaactattggccagcttctatgttgg > 1:757399‑M1/90‑91 (MQ=255) ttctttatcttttcgaaattctctgtgttggggcccttaccccaacttgcacattattgaaagctgactattggccagcttctgtgttggg > 1:594077‑M1/89‑91 (MQ=255) tctttatcttttcgaaattctctgtgttggggcccttaccccaacttgcacattattgaaagctgactattggccagcttctgtgttgggg > 1:3846798‑M1/88‑91 (MQ=255) cacaTATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCgggg > 1:2425142/1‑91 (MQ=255) cacaTATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCgggg < 1:71700/91‑1 (MQ=255) aagctgactattggccagcttctgtgttggggcccttaccccaacttgcacattattgaaagctaactattggccagcttctatgttgggg > 1:1289522‑M1/88‑91 (MQ=255) agctgactattggccagcttctgtgttggggcccttaccccaacttgcacattattgaaagctaactattggccagcttctatgttGGGGc > 1:234125‑M1/87‑91 (MQ=255) acaTATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGc < 1:3029388/91‑1 (MQ=255) acaTATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGc < 1:2780338/91‑1 (MQ=255) atatTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGccc < 1:2953112/91‑1 (MQ=255) tgactattggccagcttctgtgttggggcccttaccccaacttgcacattattgaaagctaactattggccagcttctatgttGGGGcccc > 1:1747513‑M1/84‑91 (MQ=255) tatcttttcgaaattctctgtgttggggcccttaccccaacttgcacattattgaaagctgactattggccagcttctgtgttggggtaag > 1:446857‑M1/84‑87 (MQ=255) ttCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCaa < 1:1278778/91‑1 (MQ=255) aaGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACAt < 1:1288329/91‑1 (MQ=255) agagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATa > 1:1487748/1‑91 (MQ=255) gagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATag < 1:731115/91‑1 (MQ=255) gagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATag < 1:2280977/91‑1 (MQ=255) gagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATag < 1:1150223/91‑1 (MQ=255) gCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATagag < 1:2017993/91‑1 (MQ=255) gCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATagag > 1:3053475/1‑91 (MQ=255) cTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAgaga > 1:1700150/1‑91 (MQ=255) tCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGaa > 1:169666/1‑91 (MQ=255) gaTATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTc > 1:2404407/1‑91 (MQ=255) atatAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCg < 1:467417/91‑1 (MQ=255) atatAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCg > 1:877006/1‑91 (MQ=255) ataAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGaa < 1:749131/91‑1 (MQ=255) gTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAGCCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGa > 1:3591857/1‑91 (MQ=255) gTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACTGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGa > 1:770775/1‑91 (MQ=255) acgTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAAGGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAAtt < 1:3627348/89‑1 (MQ=255) aTGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAAtt < 1:1063134/91‑1 (MQ=255) tGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTc > 1:2553287/1‑91 (MQ=255) aCTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTAc < 1:4129828/91‑1 (MQ=255) aCTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTAc < 1:852110/91‑1 (MQ=255) aGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGa > 1:3696438/1‑91 (MQ=255) cacacaATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACaa < 1:534007/91‑1 (MQ=255) acacaATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAAt > 1:2767429/1‑91 (MQ=255) acaATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGc < 1:3640425/91‑1 (MQ=255) acaATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGc > 1:3008717/1‑91 (MQ=255) acaATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGc < 1:924871/91‑1 (MQ=255) caATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCa < 1:3903137/91‑1 (MQ=255) caATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCa > 1:1903829/1‑91 (MQ=255) aaTTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCaa > 1:184210/1‑91 (MQ=255) aTTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAg < 1:3687873/91‑1 (MQ=255) aTTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAg < 1:2728879/91‑1 (MQ=255) aTTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAg < 1:2032677/91‑1 (MQ=255) tttAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGt < 1:503130/91‑1 (MQ=255) gcacattatagtaagctgacttttcgtcagcttctgtgttGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGt < 1:2574417‑M1/51‑1 (MQ=255) acattattgaaagctaactattggccagcttctatgttGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTg > 1:2516821‑M1/39‑91 (MQ=255) aaTATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTgg < 1:3109469/91‑1 (MQ=255) aaTATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTgg < 1:1428137/91‑1 (MQ=255) aaTATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTgg < 1:2828929/91‑1 (MQ=255) aaTATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTgg > 1:3853451/1‑91 (MQ=255) aaTATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTgg > 1:2819698/1‑91 (MQ=255) attattgaaagctaactattggccagcttctatgttGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGc > 1:2648665‑M1/37‑91 (MQ=255) atatCGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGc < 1:3463596/91‑1 (MQ=255) ttattgaaagctaactattggccagcttctatgttGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCg > 1:782608‑M1/36‑91 (MQ=255) tattgaaagctaactattggccagcttctatgttGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCgg > 1:972222‑M1/35‑91 (MQ=255) ttGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCggg > 1:772618/1‑91 (MQ=255) ttGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCggg < 1:1707822/91‑1 (MQ=255) attgaaagctaactattggccagcttctatgttGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAagttggtggg > 1:1869356‑M1/34‑87 (MQ=255) attgaaagctaactattggccagcttctatgttGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCggg > 1:3513748‑M1/34‑91 (MQ=255) tGACAGTAATTAACCGATCGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCgggg < 1:3550292/91‑1 (MQ=255) tGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCgggg < 1:1292790/91‑1 (MQ=255) tGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCgggg < 1:43330/91‑1 (MQ=255) tgaaagctaactattgaccagcttctatgtcGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGc > 1:2653492‑M1/32‑91 (MQ=255) aCAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGcc < 1:1670106/91‑1 (MQ=255) aGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGcccc < 1:51200/91‑1 (MQ=255) aGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGcccc > 1:936107/1‑91 (MQ=255) aGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGcccc > 1:1409707/1‑91 (MQ=255) aaTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAAc < 1:155308/91‑1 (MQ=255) aaTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAAc < 1:155320/91‑1 (MQ=255) aaTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAAc < 1:3940103/91‑1 (MQ=255) aTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACa > 1:3359844/1‑91 (MQ=255) aTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACa < 1:2059790/91‑1 (MQ=255) tAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAGTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATa < 1:3486285/91‑1 (MQ=255) tAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATa < 1:2358912/91‑1 (MQ=255) aaCCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAg < 1:252159/91‑1 (MQ=255) ccGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGaa < 1:2112555/91‑1 (MQ=255) gaacgaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGc > 1:2593586/1‑91 (MQ=255) cgaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTgg > 1:3476101/1‑91 (MQ=255) aaaaTGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAATTTGGCGGGGCCCCAACATAGAAGCTGGcc > 1:3321942/1‑91 (MQ=255) aaaaTGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGcc < 1:4091483/91‑1 (MQ=255) aaaTGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCa > 1:2185659/1‑91 (MQ=255) aaaTGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCa > 1:1205130/1‑91 (MQ=255) aaTGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCaa > 1:1141106/1‑91 (MQ=255) tGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATa < 1:4062662/91‑1 (MQ=255) gcgcCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAg > 1:547506/1‑91 (MQ=255) gcgcCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAg > 1:1405366/1‑91 (MQ=255) cgcCCCGGGGCACCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGt < 1:3753274/91‑1 (MQ=255) gcCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGtt > 1:862045/1‑91 (MQ=255) ccccGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACACTGCAAGTTGGCGGGGCCCCAACATAGAAGTTGGCCAATAGTTa > 1:4141390/1‑91 (MQ=255) ccccGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTa > 1:2984675/1‑91 (MQ=255) GGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCtt < 1:1043729‑M1/91‑1 (MQ=255) GGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCtt < 1:1718956‑M1/91‑1 (MQ=255) | ATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTT > USA300TCH1516_ALE/1873492‑1873672 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |