| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1876716 | 98 (1.000) | 6 (0.070) | 4/148 | NT | 6.0% | coding (151/1662 nt) | murJ_2 | Lipid II flippase MurJ |
| ? | USA300TCH1516_ALE | = 1876739 | 98 (1.080) | coding (128/1662 nt) | murJ_2 | Lipid II flippase MurJ | |||||
ACTTTATATGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1876622‑1876716‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatggCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCGAAATATGTTGCGA < USA300TCH1516_ALE/1876739‑1876650 ACTTTATATGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCGGCTGTCGCAACTGCAATTGCAATATTAT < 1:187818/91‑1 TATATGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGG < 1:3233092/91‑1 TTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGCGCCGTTCACATACGCTTATGC < 1:3526546/91‑1 GCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGCGCCGTTCACATACGCTTATGCACCA < 1:2040291/91‑1 GCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGCGCCGTTCACATACGCTTATGCACCA < 1:360763/91‑1 CAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGCGCCGTTCACATACGCTTATGCACCAT < 1:3759914/91‑1 CATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGCGCCGTTCACATACGCTTATGCACCATATA < 1:3806486/91‑1 CATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGCGCCGTTCACATACGCTTATGCACCATATA < 1:6899/91‑1 TGGCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCTAAATATGTTGC > 1:3765795/1‑91 TGGCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCGAAATATGTTGC < 1:2580248/91‑1 TGGCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCGAAATATGTTGC > 1:2670476/1‑91 TGGCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCGAAATATGTTGC > 1:3719015/1‑91 TGGCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCGAAATATGTTGC > 1:436201/1‑91 TGGCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCCAAATATGTTGC > 1:3766967/1‑91 GGCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCGAAATATGTTGCG < 1:2877114/91‑1 GCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCGAAATATGTTGCGA < 1:1633722/91‑1 ACTTTATATGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1876622‑1876716‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatggCGCCGTTCACATACGCTTATGCACCATATAATATTGCAATTGCAGTTGCGACAGCAGGTGTACCATTAGCAGCTTCGAAATATGTTGCGA < USA300TCH1516_ALE/1876739‑1876650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |