BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1876716	98 (1.000)	6 (0.070)	4/148	NT	6.0%	coding (151/1662 nt)	murJ_2	Lipid II flippase MurJ
*	?	USA300TCH1516_ALE	= 1876739	98 (1.080)	6 (0.070)	4/148	NT	6.0%	coding (128/1662 nt)	murJ_2	Lipid II flippase MurJ

Only 100 of 120 total aligned reads displayed.

TTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATGGTAATTA  >  USA300TCH1516_ALE/1876649‑1876829

ttCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGgcg                                                                                            <  1:2391758/91‑1 (MQ=255)

 tCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGc                                                                                           <  1:1633722‑M2/91‑2 (MQ=255)

  cGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcc                                                                                          <  1:2877114‑M2/91‑3 (MQ=255)

   gCAACATATTTGGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                                         >  1:3766967‑M2/1‑88 (MQ=255)

   gCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                                         <  1:2580248‑M2/91‑4 (MQ=255)

   gCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                                         >  1:3719015‑M2/1‑88 (MQ=255)

   gCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                                         >  1:436201‑M2/1‑88 (MQ=255)

   gCAACATATTTAGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                                         >  1:3765795‑M2/1‑88 (MQ=255)

        atatTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATAttt                                                                                    >  1:1604819/1‑91 (MQ=255)

          atTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTc                                                                                  <  1:918003/91‑1 (MQ=255)

            ttCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCtt                                                                                >  1:1085138/1‑91 (MQ=255)

            ttCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCtt                                                                                >  1:1085120/1‑91 (MQ=255)

             tCGAAGCTGCTAATGGTACACCTGCTGTCGCAACCGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTg                                                                               >  1:3881870/1‑91 (MQ=255)

              cGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGt                                                                              <  1:1297253/91‑1 (MQ=255)

                aaGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTcc                                                                            <  1:2876236/91‑1 (MQ=255)

                 aGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTcca                                                                           <  1:474765/91‑1 (MQ=255)

                 aGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTcca                                                                           <  1:474764/91‑1 (MQ=255)

                 aGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTcca                                                                           >  1:883430/1‑91 (MQ=255)

                   ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                                         <  1:1997464/91‑1 (MQ=255)

                   ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                                         <  1:201338/91‑1 (MQ=255)

                   ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                                         <  1:725037/91‑1 (MQ=255)

                   ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                                         <  1:724762/91‑1 (MQ=255)

                    tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                                        <  1:1357613/91‑1 (MQ=255)

                    tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                                        <  1:1357576/91‑1 (MQ=255)

                    tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                                        <  1:1357445/91‑1 (MQ=255)

                    tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                                        >  1:1356937/1‑91 (MQ=255)

                    tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                                        <  1:1357664/91‑1 (MQ=255)

                     gctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCaa                                                                       >  1:2774080/1‑91 (MQ=255)

                     gctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCaa                                                                       >  1:2012038/1‑91 (MQ=255)

                     gctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCaa                                                                       >  1:2773972/1‑91 (MQ=255)

                      ctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAt                                                                      <  1:43536/91‑1 (MQ=255)

                      ctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAt                                                                      <  1:1406624/91‑1 (MQ=255)

                      ctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAt                                                                      <  1:2157579/91‑1 (MQ=255)

                        aaTGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTa                                                                    <  1:1468506/91‑1 (MQ=255)

                        aaTGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTa                                                                    <  1:1470787/91‑1 (MQ=255)

                        aaTGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTa                                                                    >  1:2687840/1‑91 (MQ=255)

                        aaTGGTACACCTGCTGTCGCAACTGCAATTGCAAGATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAtga                                                                    >  1:1800187/1‑89 (MQ=255)

                           ggTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAAt                                                                 <  1:516943/91‑1 (MQ=255)

                             tACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAg                                                               >  1:2706987/1‑91 (MQ=255)

                              acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGTATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                                              <  1:2973254/91‑1 (MQ=255)

                              acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                                              <  1:1858885/91‑1 (MQ=255)

                              acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                                              >  1:2911172/1‑91 (MQ=255)

                              acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                                              <  1:1479486/91‑1 (MQ=255)

                               cacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGtt                                                             <  1:1441526/91‑1 (MQ=255)

                               cacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGtt                                                             >  1:1589303/1‑91 (MQ=255)

                               cacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGtt                                                             <  1:2704964/91‑1 (MQ=255)

                               cacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGtt                                                             <  1:2705169/91‑1 (MQ=255)

                               cacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGtt                                                             <  1:2705673/91‑1 (MQ=255)

                                 ccTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTga                                                           >  1:3097952/1‑91 (MQ=255)

                                    gctgTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatg                                                        >  1:3264837/1‑91 (MQ=255)

                                     ctgTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatgg                                                       >  1:2633571/1‑91 (MQ=255)

                                     ctgTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatgg                                                       >  1:138214/1‑91 (MQ=255)

                                      tgTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatgga                                                      <  1:1930694/91‑1 (MQ=255)

                                      tgTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatgga                                                      <  1:1177760/91‑1 (MQ=255)

                                       gTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatggaa                                                     <  1:2144714/91‑1 (MQ=255)

                                        tCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatggaat                                                    <  1:1472188/91‑1 (MQ=255)

                                        tCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatggaat                                                    <  1:1472154/91‑1 (MQ=255)

                                          gCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGa                                                  >  1:1991334/1‑91 (MQ=255)

                                              cTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATaaa                                              >  1:2038254/1‑91 (MQ=255)

                                               tgcaattgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATaaaa                                             <  1:714992/91‑1 (MQ=255)

                                                gcaattgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATaaaaa                                            >  1:4086178/1‑91 (MQ=255)

                                                   attgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTa                                         >  1:3721734/1‑91 (MQ=255)

                                                     tgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACg                                       >  1:1547290/1‑91 (MQ=255)

                                                       caatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGcc                                     <  1:681606/91‑1 (MQ=255)

                                                       caatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGcc                                     <  1:3673480/91‑1 (MQ=255)

                                                        aatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGccc                                    >  1:1096787/1‑91 (MQ=255)

                                                        aatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGccc                                    <  1:1557873/91‑1 (MQ=255)

                                                        aatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGccc                                    <  1:195315/91‑1 (MQ=255)

                                                            ttatATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATa                                <  1:630634/91‑1 (MQ=255)

                                                             tataTGGTGCATAAGCGTATGTGAACGGCGccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatg                               <  1:3806486‑M2/91‑62 (MQ=255)

                                                             tataTGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATAc                               <  1:2497442/91‑1 (MQ=255)

                                                              atatGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATAcc                              >  1:2811755/1‑91 (MQ=255)

                                                               tatGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCt                             <  1:2183916/91‑1 (MQ=255)

                                                                atGGTGCATAGGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCtt                            <  1:2665979/91‑1 (MQ=255)

                                                                 tGGTGCATAAGCGTATGTGAACGGCGccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttgc                           <  1:360763‑M2/91‑66 (MQ=255)

                                                                     gCATAAGCGTATGTGAACGGCGccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttgcgaaa                       <  1:3526546‑M2/91‑70 (MQ=255)

                                                                     gCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGtaa                       >  1:2553774/1‑91 (MQ=255)

                                                                     gCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGtaa                       >  1:3698225/1‑91 (MQ=255)

                                                                     gCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGtaa                       >  1:1418195/1‑91 (MQ=255)

                                                                       aTAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGtaatt                     >  1:555294/1‑91 (MQ=255)

                                                                          aGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGtaattaat                  >  1:186655/1‑91 (MQ=255)

                                                                          aGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGtaattaat                  <  1:3472457/91‑1 (MQ=255)

                                                                          aGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGtaattaat                  <  1:3472484/91‑1 (MQ=255)

                                                                            cGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAatat                >  1:610242/1‑91 (MQ=255)

                                                                            cGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAatat                >  1:144480/1‑91 (MQ=255)

                                                                              tATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATAc              <  1:525233/91‑1 (MQ=255)

                                                                                tgtgAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTa            <  1:454140/91‑1 (MQ=255)

                                                                                tgtgAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTa            >  1:3224090/1‑91 (MQ=255)

                                                                                tgtgAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTa            >  1:708524/1‑91 (MQ=255)

                                                                                tgtgAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTa            <  1:241461/91‑1 (MQ=255)

                                                                                tgtgAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTa            >  1:3845900/1‑91 (MQ=255)

                                                                                   gAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATg         <  1:3829232/91‑1 (MQ=255)

                                                                                    aaCGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATgg        <  1:2864616/91‑1 (MQ=255)

                                                                                    aaCGGCGCCATATTTTCTTGTCCACCAATTAAAGAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATgg        <  1:814488/91‑1 (MQ=255)

                                                                                     aCGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATGGt       <  1:2799401/91‑1 (MQ=255)

                                                                                      cGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATGGTa      >  1:689646/1‑91 (MQ=255)

                                                                                        gcgcCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATGGTAAt    >  1:937543/1‑91 (MQ=255)

                                                                                        gcgcCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATGGTAAt    >  1:937515/1‑91 (MQ=255)

                                                                                        gcgcCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATGGTAAt    <  1:881656/91‑1 (MQ=255)

                                                                                          gcCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATGGTAATTa  >  1:3897212/1‑91 (MQ=255)

TTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGTAATTAATATACTAATGGTAATTA  >  USA300TCH1516_ALE/1876649‑1876829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.