BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1876716	98 (1.000)	6 (0.070)	4/148	NT	6.0%	coding (151/1662 nt)	murJ_2	Lipid II flippase MurJ
*	?	USA300TCH1516_ALE	= 1876739	98 (1.080)	6 (0.070)	4/148	NT	6.0%	coding (128/1662 nt)	murJ_2	Lipid II flippase MurJ

Only 100 of 135 total aligned reads displayed.

TATATGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGT  >  USA300TCH1516_ALE/1876626‑1876806

tataTGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGG                                                                                            <  1:3233092‑M1/91‑1 (MQ=255)

 atatGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGt                                                                                           >  1:1216714/1‑91 (MQ=255)

 atatGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGt                                                                                           >  1:769238/1‑91 (MQ=255)

  tatGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTg                                                                                          <  1:2919503/91‑1 (MQ=255)

  tatGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTg                                                                                          >  1:552654/1‑91 (MQ=255)

   atGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGc                                                                                         >  1:3105719/1‑91 (MQ=255)

    tGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCa                                                                                        >  1:3511866/1‑91 (MQ=255)

      ccccAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATa                                                                                      >  1:3904706/1‑91 (MQ=255)

      ccccAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATa                                                                                      <  1:3409164/91‑1 (MQ=255)

      ccccAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATa                                                                                      >  1:1889834/1‑91 (MQ=255)

       cccAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATaa                                                                                     >  1:1500730/1‑91 (MQ=255)

        ccAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAg                                                                                    <  1:1614918/91‑1 (MQ=255)

        ccAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAg                                                                                    <  1:1614744/91‑1 (MQ=255)

           aTAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGt                                                                                 <  1:2697126/91‑1 (MQ=255)

              gCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTAtg                                                                              <  1:3701499/91‑1 (MQ=255)

              gCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTAtg                                                                              >  1:2041593/1‑91 (MQ=255)

               cATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTAtgt                                                                             >  1:3452039/1‑91 (MQ=255)

                aTTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTAtgtg                                                                            >  1:2164283/1‑91 (MQ=255)

                aTTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTAtgtg                                                                            >  1:2162523/1‑91 (MQ=255)

                 ttATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGa                                                                           <  1:3986842/91‑1 (MQ=255)

                 ttATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGa                                                                           <  1:3695529/91‑1 (MQ=255)

                 ttATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGa                                                                           >  1:1825945/1‑91 (MQ=255)

                     atTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACgg                                                                       >  1:2445490/1‑91 (MQ=255)

                       ttCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGgcg                                                                     <  1:2391758/91‑1 (MQ=255)

                        tCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGc                                                                    <  1:1633722‑M2/91‑2 (MQ=255)

                          gCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGcgccgttcacatacgcttatgcacca                                                                  <  1:360763‑M1/91‑27 (MQ=255)

                          gCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGcgccgttcacatacgcttatgcacca                                                                  <  1:2040291‑M1/91‑27 (MQ=255)

                          gCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                  >  1:436201‑M2/1‑88 (MQ=255)

                          gCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                  >  1:2670476‑M2/1‑88 (MQ=255)

                          gCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                  <  1:2580248‑M2/91‑4 (MQ=255)

                          gCAACATATTTAGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGcca                                                                  >  1:3765795‑M2/1‑88 (MQ=255)

                           cAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGcgccgttcacatacgcttatgcaccat                                                                 <  1:3759914‑M1/91‑28 (MQ=255)

                              cATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGcgccgttcacatacgcttatgcaccatata                                                              <  1:3806486‑M1/91‑31 (MQ=255)

                               atatTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATAttt                                                             >  1:1604819/1‑91 (MQ=255)

                                   ttCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCtt                                                         >  1:1085138/1‑91 (MQ=255)

                                   ttCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCtt                                                         >  1:1085120/1‑91 (MQ=255)

                                    tCGAAGCTGCTAATGGTACACCTGCTGTCGCAACCGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTg                                                        >  1:3881870/1‑91 (MQ=255)

                                     cGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGt                                                       <  1:1297253/91‑1 (MQ=255)

                                       aaGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTcc                                                     <  1:2876236/91‑1 (MQ=255)

                                        aGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTcca                                                    >  1:883430/1‑91 (MQ=255)

                                        aGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTcca                                                    <  1:474765/91‑1 (MQ=255)

                                        aGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTcca                                                    <  1:474764/91‑1 (MQ=255)

                                          ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                  >  1:3845965/1‑91 (MQ=255)

                                          ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                  <  1:724762/91‑1 (MQ=255)

                                          ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                  >  1:3606260/1‑91 (MQ=255)

                                          ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                  <  1:201338/91‑1 (MQ=255)

                                          ctgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacc                                                  <  1:1997464/91‑1 (MQ=255)

                                           tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                 <  1:1357835/91‑1 (MQ=255)

                                           tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                 <  1:1357613/91‑1 (MQ=255)

                                           tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                 <  1:1357576/91‑1 (MQ=255)

                                           tgctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTccacca                                                 <  1:1357445/91‑1 (MQ=255)

                                            gctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCaa                                                >  1:2012038/1‑91 (MQ=255)

                                            gctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCaa                                                >  1:2773972/1‑91 (MQ=255)

                                            gctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCaa                                                >  1:2774080/1‑91 (MQ=255)

                                             ctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAt                                               <  1:2157579/91‑1 (MQ=255)

                                             ctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAt                                               <  1:1406624/91‑1 (MQ=255)

                                             ctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAt                                               <  1:43536/91‑1 (MQ=255)

                                             ctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAt                                               <  1:172522/91‑1 (MQ=255)

                                             ctAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAAt                                               <  1:1321636/91‑1 (MQ=255)

                                               aaTGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTa                                             <  1:1468506/91‑1 (MQ=255)

                                               aaTGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTa                                             <  1:1470787/91‑1 (MQ=255)

                                               aaTGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTa                                             >  1:2687840/1‑91 (MQ=255)

                                                    tACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAg                                        >  1:2706987/1‑91 (MQ=255)

                                                     acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGTATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                       <  1:2973254/91‑1 (MQ=255)

                                                     acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                       <  1:1858885/91‑1 (MQ=255)

                                                     acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                       <  1:1479486/91‑1 (MQ=255)

                                                     acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                       >  1:2465634/1‑91 (MQ=255)

                                                     acacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGt                                       >  1:2911172/1‑91 (MQ=255)

                                                      cacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGtt                                      <  1:2705673/91‑1 (MQ=255)

                                                      cacCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGtt                                      <  1:2705169/91‑1 (MQ=255)

                                                            ctgTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatgg                                >  1:2633571/1‑91 (MQ=255)

                                                            ctgTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatgg                                >  1:138214/1‑91 (MQ=255)

                                                             tgTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatgga                               <  1:1930694/91‑1 (MQ=255)

                                                               tCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTgaatggaat                             <  1:1472188/91‑1 (MQ=255)

                                                                      tgcaattgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATaaaa                      <  1:714992/91‑1 (MQ=255)

                                                                      tgcaattgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATaaaa                      >  1:1454886/1‑91 (MQ=255)

                                                                        caattgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAg                    >  1:3125833/1‑91 (MQ=255)

                                                                          attgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTa                  >  1:3721734/1‑91 (MQ=255)

                                                                            tgcaatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACg                >  1:1547290/1‑91 (MQ=255)

                                                                              caatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGcc              <  1:681606/91‑1 (MQ=255)

                                                                               aatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGccc             >  1:1096787/1‑91 (MQ=255)

                                                                               aatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGccc             <  1:1557873/91‑1 (MQ=255)

                                                                               aatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGccc             <  1:195451/91‑1 (MQ=255)

                                                                               aatATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGccc             <  1:195315/91‑1 (MQ=255)

                                                                                   ttatATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATa         <  1:630634/91‑1 (MQ=255)

                                                                                    tataTGGTGCATAAGCGTATGTGAACGGCGccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatg        <  1:3806486‑M2/91‑62 (MQ=255)

                                                                                    tataTGGTGCATAAGCGTATGTGAACGGCGccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatg        <  1:6899‑M2/91‑62 (MQ=255)

                                                                                    tataTGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATAc        <  1:2497442/91‑1 (MQ=255)

                                                                                    tataTGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATAc        <  1:438805/91‑1 (MQ=255)

                                                                                     atatGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATAcc       >  1:2811755/1‑91 (MQ=255)

                                                                                      tatGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCt      <  1:2183916/91‑1 (MQ=255)

                                                                                       atGGTGCATAGGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCtt     <  1:2665979/91‑1 (MQ=255)

                                                                                       atGGTGCATAAGCGTATGTGAACGGCGccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttg     <  1:3759914‑M2/91‑65 (MQ=255)

                                                                                        tGGcgccgttcacatacgcttatgcaccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttgc    >  1:436201‑M1/1‑3 (MQ=255)

                                                                                        tGGcgccgttcacatacgcttatgcaccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttgc    >  1:3719015‑M1/1‑3 (MQ=255)

                                                                                        tGGcgccgttcacatacgcttatgcaccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttccaaatatgttgc    >  1:3766967‑M1/1‑3 (MQ=255)

                                                                                        tGGTGCATAAGCGTATGTGAACGGCGccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttgc    <  1:360763‑M2/91‑66 (MQ=255)

                                                                                        tGGTGCATAAGCGTATGTGAACGGCGccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttgc    <  1:2040291‑M2/91‑66 (MQ=255)

                                                                                         ggcgccgttcacatacgcttatgcaccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttgcg   <  1:2877114‑M1/91‑90 (MQ=255)

                                                                                          gcgccgttcacatacgcttatgcaccatataatattgcaattgcagttgcgacagcaggtgtaccattagcagcttcgaaatatgttgcga  <  1:1633722‑M1/91‑91 (MQ=255)

TATATGCCCCAATAGCATTATATTTCGCAACATATTTCGAAGCTGCTAATGGTACACCTGCTGTCGCAACTGCAATTGCAATATTATATGGTGCATAAGCGTATGTGAACGGCGCCATATTTTCTTGTCCACCAATTAAATAGTTGAATGGAATGATAAAAAGTACGCCCAATACCTTGGT  >  USA300TCH1516_ALE/1876626‑1876806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.