| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1901310 = | 105 (1.070) | 11 (0.130) | 6/142 | NT | 11.9% | intergenic (‑306/‑217) | USA300HOU_RS09405/sdpR | hypothetical protein/Transcriptional repressor SdpR |
| ? | USA300TCH1516_ALE | 1901351 = | 69 (0.790) | intergenic (‑347/‑176) | USA300HOU_RS09405/sdpR | hypothetical protein/Transcriptional repressor SdpR | |||||
TAAAGATAAATTATAGATATTGATTTTGCAAAATATACTCTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1901407‑1901310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcacctt‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAAAT > USA300TCH1516_ALE/1901351‑1901439 TAAAGATAAATTATAGATATTGATTTTGCAAAATATACTCTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAA > 1:3584189/1‑91 AAAGATAAATTATAGATATTGATTTTGCAAAATATACTCTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAAT > 1:3884498/1‑91 AAGATAAATTATAGATATTGATTTTGCAAAATATACTCTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAATC < 1:1867505/91‑1 GATAAATTATAGATATTGATTTTGCAAAATATACTCTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAATCAC > 1:866502/1‑91 ATAAATTATAGATATTGATTTTGCAAAATATACTCTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAATCACC < 1:831355/91‑1 ATAAATTATAGATATTGATTTTGCAAAATATACTCTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAATCACC > 1:3578911/1‑91 ATAAATTATAGATATTGATTTTGCAAAATATACACTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAATCACC < 1:3675247/91‑1 AAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAT > 1:2909263/1‑91 GGTGATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTAT > 1:1544038/1‑91 GGTGATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTAT > 1:3054501/1‑91 GATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTT > 1:3906014/1‑91 GATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTT > 1:193358/1‑91 ATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTT > 1:2716971/1‑91 ATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTT > 1:2863581/1‑91 ATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTT > 1:801571/1‑91 ATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTT > 1:1384990/1‑91 ATATCTTGAGTGTATGGCCAATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCC > 1:994510/1‑91 TATCTTGAGTGTATGGCCAATCACCTTAGTTGAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCC > 1:2916238/1‑91 AATCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAA < 1:3237669/91‑1 TCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATT < 1:2917329/91‑1 TCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATT < 1:3717541/91‑1 TCACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATT < 1:1811441/91‑1 CACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTT < 1:1594587/91‑1 ACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTA < 1:313209/91‑1 ACCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTA > 1:1376964/1‑91 CCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAA < 1:3669972/91‑1 CCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAA < 1:1815572/91‑1 CCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAA > 1:152646/1‑91 CCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAA < 1:813575/91‑1 CCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAA > 1:1067861/1‑91 CCTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAA > 1:1067660/1‑91 CTT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAAA > 1:347267/1‑91 TT‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAAAT < 1:3371942/91‑1 TAAAGATAAATTATAGATATTGATTTTGCAAAATATACTCTTTGTTCTGCATTGAAAAAGGTGATTAGCCATATCTTGAGTGTATGGCCAATCACCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1901407‑1901310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcacctt‑TTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAAAT > USA300TCH1516_ALE/1901351‑1901439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |