BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1901310 =	105 (1.070)	11 (0.130)	6/142	NT	11.9%	intergenic (‑306/‑217)	USA300HOU_RS09405/sdpR	hypothetical protein/Transcriptional repressor SdpR
*	?	USA300TCH1516_ALE	1901351 =	69 (0.790)	11 (0.130)	6/142	NT	11.9%	intergenic (‑347/‑176)	USA300HOU_RS09405/sdpR	hypothetical protein/Transcriptional repressor SdpR

Only 100 of 120 total aligned reads displayed.

AAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAAAT  >  USA300TCH1516_ALE/1901262‑1901439

attatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtttt                                                                                         >  1:2909263‑M1/49‑91 (MQ=255)

aaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtttt                                                                                         <  1:12779/91‑1 (MQ=255)

aaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtttt                                                                                         >  1:1280918/1‑91 (MQ=255)

   cAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCa                                                                                      <  1:2116824/91‑1 (MQ=255)

   cAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCa                                                                                      >  1:131320/1‑91 (MQ=255)

     aaGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAAt                                                                                    <  1:3744772/91‑1 (MQ=255)

     aaGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAAt                                                                                    >  1:3901081/1‑91 (MQ=255)

      aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                                   >  1:2430184/1‑91 (MQ=255)

      aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                                   >  1:2325485/1‑91 (MQ=255)

      aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                                   <  1:3725284/91‑1 (MQ=255)

       gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                                                                  >  1:3825378/1‑91 (MQ=255)

       gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                                                                  >  1:295109/1‑91 (MQ=255)

       gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                                                                  >  1:295211/1‑91 (MQ=255)

       gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                                                                  >  1:1037899/1‑91 (MQ=255)

       gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                                                                  >  1:114653/1‑91 (MQ=255)

         ttcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCACGATATGGCTAATCACCTTTTTCACTGCAg                                                                                >  1:1320351/1‑91 (MQ=255)

          tcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGa                                                                               <  1:1619632/91‑1 (MQ=255)

          tcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGa                                                                               <  1:1619566/91‑1 (MQ=255)

             tAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACa                                                                            >  1:4128902/1‑91 (MQ=255)

               aTCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACaaa                                                                          <  1:1495264/91‑1 (MQ=255)

               aTCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACaaa                                                                          <  1:1495541/91‑1 (MQ=255)

                  aagaCCCTGGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAagag                                                                       <  1:1046986/88‑1 (MQ=255)

                  aaTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAagag                                                                       <  1:199582/91‑1 (MQ=255)

                          tGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATActtt                                                               >  1:3266542/1‑91 (MQ=255)

                           gATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTg                                                              >  1:2551976/1‑91 (MQ=255)

                            aTTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGc                                                             <  1:1637164/91‑1 (MQ=255)

                            aTTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGc                                                             <  1:2255034/91‑1 (MQ=255)

                              tACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaa                                                           <  1:3050864/91‑1 (MQ=255)

                                cAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaaaa                                                         <  1:1530398/91‑1 (MQ=255)

                                 aaaaTAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAAt                                                        >  1:1902198/1‑91 (MQ=255)

                                 aaaaTAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAAt                                                        <  1:2508723/91‑1 (MQ=255)

                                   aataaatTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCa                                                      >  1:488177/1‑91 (MQ=255)

                                       aatTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAatat                                                  <  1:1122671/91‑1 (MQ=255)

                                       aatTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAatat                                                  >  1:2495675/1‑91 (MQ=255)

                                         ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                                <  1:879144/91‑1 (MQ=255)

                                         ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                                <  1:3637886/91‑1 (MQ=255)

                                         ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                                <  1:674208/91‑1 (MQ=255)

                                              cTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAt                                           >  1:3877452/1‑91 (MQ=255)

                                              aaaaggtgattagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAt                                           >  1:2909263‑M2/44‑91 (MQ=255)

                                               tAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAtt                                          <  1:1199050/91‑1 (MQ=255)

                                                  ggtgattagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTAt                                       >  1:1544038‑M2/40‑91 (MQ=255)

                                                  ggtgattagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTAt                                       >  1:3054501‑M2/40‑91 (MQ=255)

                                                  GGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGTGTATATTTTGCAAAATCAATATCTATAATTTAt                                       <  1:3675247‑M1/91‑1 (MQ=255)

                                                  GGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTAt                                       >  1:3578911‑M1/1‑91 (MQ=255)

                                                  GGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTAt                                       <  1:831355‑M1/91‑1 (MQ=255)

                                                   GTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATc                                      >  1:866502‑M1/1‑91 (MQ=255)

                                                     gattagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCtt                                    >  1:193358‑M2/37‑91 (MQ=255)

                                                     gattagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCtt                                    >  1:3906014‑M2/37‑91 (MQ=255)

                                                     GATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCtt                                    <  1:1867505‑M1/91‑1 (MQ=255)

                                                      attagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                                   >  1:801571‑M2/36‑91 (MQ=255)

                                                      attagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                                   >  1:2716971‑M2/36‑91 (MQ=255)

                                                      attagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                                   >  1:2863581‑M2/36‑91 (MQ=255)

                                                      attagccatatcttgagtgtatggccaatcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                                   >  1:1384990‑M2/36‑91 (MQ=255)

                                                      ATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                                   >  1:3884498‑M1/1‑91 (MQ=255)

                                                       TTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTa                                  >  1:3584189‑M1/1‑91 (MQ=255)

                                                         ggCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAAt                                <  1:2733634/91‑1 (MQ=255)

                                                          gCCGTACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATa                               <  1:3218272/91‑1 (MQ=255)

                                                          gCCATGCACTCAAGATATGGCTAATAACCTTTTTCAATGGAGAACAAAGAGTAGATTTTGCAAAATCAATATCTATAATTTATCTTTAATa                               <  1:3861961/91‑1 (MQ=255)

                                                          gCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATa                               <  1:2881480/91‑1 (MQ=255)

                                                          gCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATa                               >  1:3138354/1‑91 (MQ=255)

                                                           ccATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAc                              >  1:1190796/1‑91 (MQ=255)

                                                           ccATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAc                              <  1:1816268/91‑1 (MQ=255)

                                                           ccATACAATCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTAGCTTTAATAc                              <  1:2079660/91‑1 (MQ=255)

                                                             aTACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAccc                            <  1:1424304/91‑1 (MQ=255)

                                                             aTACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAccc                            <  1:180090/91‑1 (MQ=255)

                                                               acacTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCtt                          >  1:1626491/1‑91 (MQ=255)

                                                                cacTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCttt                         >  1:2045433/1‑91 (MQ=255)

                                                                 acTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCtttt                        <  1:2202454/91‑1 (MQ=255)

                                                                  cTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTa                       <  1:879880/91‑1 (MQ=255)

                                                                   tCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTaa                      >  1:1903966/1‑91 (MQ=255)

                                                                       gATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACt                  <  1:3184530/91‑1 (MQ=255)

                                                                       gATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACt                  <  1:3184052/91‑1 (MQ=255)

                                                                        atatGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTa                 >  1:1890569/1‑91 (MQ=255)

                                                                        atatGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTa                 >  1:1890922/1‑91 (MQ=255)

                                                                         tatGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTaa                <  1:2667998/91‑1 (MQ=255)

                                                                          atGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTaaa               <  1:342235/91‑1 (MQ=255)

                                                                           tGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTaaaa              <  1:2438497/91‑1 (MQ=255)

                                                                           tGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTaaaa              >  1:3357903/1‑91 (MQ=255)

                                                                            ggCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAc             <  1:3715250/91‑1 (MQ=255)

                                                                            ggCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAc             <  1:906251/91‑1 (MQ=255)

                                                                            ggCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAc             >  1:887429/1‑91 (MQ=255)

                                                                            ggCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAc             <  1:560263/91‑1 (MQ=255)

                                                                             gCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAcc            <  1:889050/91‑1 (MQ=255)

                                                                             gCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAcc            <  1:2008034/91‑1 (MQ=255)

                                                                             gCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAcc            <  1:875646/91‑1 (MQ=255)

                                                                              cTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCa           >  1:3988728/1‑91 (MQ=255)

                                                                                  tcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAAtt       <  1:3717541‑M2/84‑1 (MQ=255)

                                                                                  tcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAAtt       <  1:1811441‑M2/84‑1 (MQ=255)

                                                                                  tcaccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAAtt       <  1:2917329‑M2/84‑1 (MQ=255)

                                                                                   caccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAAttt      <  1:1594587‑M2/85‑1 (MQ=255)

                                                                                    accttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTa     <  1:313209‑M2/86‑1 (MQ=255)

                                                                                    accttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTa     >  1:1376964‑M2/6‑91 (MQ=255)

                                                                                     ccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTaa    <  1:813575‑M2/87‑1 (MQ=255)

                                                                                     ccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTaa    <  1:3669972‑M2/87‑1 (MQ=255)

                                                                                     ccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTaa    >  1:1067660‑M2/5‑91 (MQ=255)

                                                                                     ccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTaa    >  1:1067861‑M2/5‑91 (MQ=255)

                                                                                     ccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTaa    >  1:152646‑M2/5‑91 (MQ=255)

                                                                                     ccttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTaa    <  1:1815572‑M2/87‑1 (MQ=255)

                                                                                      cttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTaaa   >  1:347267‑M2/4‑91 (MQ=255)

                                                                                       ttTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAAAt  <  1:3371942‑M2/89‑1 (MQ=255)

AAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAAATTTAAAT  >  USA300TCH1516_ALE/1901262‑1901439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.