BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1901310 =	105 (1.070)	11 (0.130)	6/142	NT	11.9%	intergenic (‑306/‑217)	USA300HOU_RS09405/sdpR	hypothetical protein/Transcriptional repressor SdpR
*	?	USA300TCH1516_ALE	1901351 =	69 (0.790)	11 (0.130)	6/142	NT	11.9%	intergenic (‑347/‑176)	USA300HOU_RS09405/sdpR	hypothetical protein/Transcriptional repressor SdpR

Only 100 of 140 total aligned reads displayed.

TTAATCTCATTAGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATT  >  USA300TCH1516_ALE/1901221‑1901399

atttaaatttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaaa                                                                                          <  1:3371942‑M1/2‑1 (MQ=255)

 tAATCTCATTAGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAg                                                                                         <  1:3905653/91‑1 (MQ=255)

  ttaaatttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAgg                                                                                        >  1:152646‑M1/88‑91 (MQ=255)

  ttaaatttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAgg                                                                                        >  1:1067660‑M1/88‑91 (MQ=255)

  ttaaatttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAgg                                                                                        <  1:813575‑M1/4‑1 (MQ=255)

  ttaaatttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAgg                                                                                        <  1:1815572‑M1/4‑1 (MQ=255)

   taaatttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGt                                                                                       >  1:1376964‑M1/87‑91 (MQ=255)

   aTCTCATTAGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGt                                                                                       <  1:3212007/91‑1 (MQ=255)

    tctcATTAGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTg                                                                                      <  1:1848225/91‑1 (MQ=255)

     aatttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGTGa                                                                                     <  1:2917329‑M1/7‑1 (MQ=255)

     aatttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGTGa                                                                                     <  1:3717541‑M1/7‑1 (MQ=255)

       tttggttttagtattaaaagggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGTGAtt                                                                                   <  1:3237669‑M1/9‑1 (MQ=255)

       cATTAGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGAtt                                                                                   <  1:3211562/91‑1 (MQ=255)

        aTTAGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTg                                                                                  >  1:3405/1‑91 (MQ=255)

        aTTAGTAATGCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTg                                                                                  <  1:3964559/91‑1 (MQ=255)

         ttAGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTgg                                                                                 >  1:2152868/1‑91 (MQ=255)

           aGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGcc                                                                               <  1:1432776/91‑1 (MQ=255)

             tAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCAt                                                                             >  1:940880/1‑91 (MQ=255)

             tAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCAt                                                                             <  1:258943/91‑1 (MQ=255)

             tAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCAt                                                                             <  1:3409617/91‑1 (MQ=255)

               aTTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATac                                                                           >  1:1214978/1‑91 (MQ=255)

               aTTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATac                                                                           <  1:662496/91‑1 (MQ=255)

               aTTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATaa                                                                           >  1:3237811/1‑90 (MQ=255)

                ttCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATaca                                                                          <  1:2226131/91‑1 (MQ=255)

                 tCTATTTATGATTTTTAGTCGTGAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATacac                                                                         <  1:1141693/91‑1 (MQ=255)

                 tCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATacac                                                                         <  1:1614733/91‑1 (MQ=255)

                 tCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATacac                                                                         <  1:2994379/91‑1 (MQ=255)

                 tCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATacac                                                                         >  1:3947369/1‑91 (MQ=255)

                    aTTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCa                                                                      <  1:3126857/91‑1 (MQ=255)

                    aTTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCa                                                                      <  1:2731057/91‑1 (MQ=255)

                    aTTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCa                                                                      <  1:2640143/91‑1 (MQ=255)

                     tttATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCaa                                                                     <  1:2232023/91‑1 (MQ=255)

                     tttATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCaa                                                                     <  1:2128178/91‑1 (MQ=255)

                     tttATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCaa                                                                     >  1:1557319/1‑91 (MQ=255)

                     tttATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCaa                                                                     >  1:1548185/1‑91 (MQ=255)

                        aTGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGat                                                                  <  1:2775331/91‑1 (MQ=255)

                        aTGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGat                                                                  >  1:4033345/1‑91 (MQ=255)

                        aTGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGat                                                                  <  1:2773520/91‑1 (MQ=255)

                         tGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGata                                                                 >  1:2484322/1‑91 (MQ=255)

                         gggtattaaagataaattatagatattgattttgcaaaatatactctttgttctgcattcaactAAGGTGATTGGCCATACACTCAAGata                                                                 >  1:2916238‑M1/65‑91 (MQ=255)

                          gATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGatat                                                                >  1:2404723/1‑91 (MQ=255)

                          gATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGatat                                                                >  1:91254/1‑91 (MQ=255)

                          gATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGatat                                                                <  1:3174062/91‑1 (MQ=255)

                          gATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGatat                                                                >  1:1473014/1‑91 (MQ=255)

                           aTTTTTAGTCGTACAAACAAAGCTTCTTAATCAATACCCTTGAGTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATg                                                               <  1:4150889/91‑1 (MQ=255)

                           aTTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATg                                                               <  1:3024741/91‑1 (MQ=255)

                           aTTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATg                                                               <  1:2207393/91‑1 (MQ=255)

                            tttttAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATgg                                                              <  1:3968578/91‑1 (MQ=255)

                               ttAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATACATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTa                                                           <  1:1073166/91‑1 (MQ=255)

                               ttAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTa                                                           <  1:1073578/91‑1 (MQ=255)

                                tAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaa                                                          <  1:2535819/91‑1 (MQ=255)

                                 aaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGTGATTGGCCATACACTCAAGATATGGCTAAt                                                         >  1:2863581‑M1/57‑91 (MQ=255)

                                 aaagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGTGATTGGCCATACACTCAAGATATGGCTAAt                                                         >  1:801571‑M1/57‑91 (MQ=255)

                                 aGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAAt                                                         <  1:3697907/91‑1 (MQ=255)

                                 aGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAAt                                                         <  1:275334/91‑1 (MQ=255)

                                 aGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAAt                                                         >  1:1782524/1‑91 (MQ=255)

                                 aGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAAt                                                         <  1:3934450/91‑1 (MQ=255)

                                 aGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAAt                                                         <  1:2967398/91‑1 (MQ=255)

                                  gTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATc                                                        <  1:2882135/91‑1 (MQ=255)

                                  aagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGTGATTGGCCATACACTCAAGATATGGCTAATc                                                        >  1:193358‑M1/56‑91 (MQ=255)

                                  aagataaattatagatattgattttgcaaaatatactctttgttctgcattgaaaAAGGTGATTGGCCATACACTCAAGATATGGCTAATc                                                        >  1:3906014‑M1/56‑91 (MQ=255)

                                    cGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCAc                                                      >  1:3785781/1‑91 (MQ=255)

                                    cGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCAc                                                      >  1:3013804/1‑91 (MQ=255)

                                    cGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCAc                                                      >  1:2677/1‑91 (MQ=255)

                                     gTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCAcc                                                     >  1:194285/1‑91 (MQ=255)

                                      tAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCt                                                    >  1:2792517/1‑91 (MQ=255)

                                      tAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCt                                                    <  1:3618904/91‑1 (MQ=255)

                                       aaaaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtt                                                   >  1:63759/1‑91 (MQ=255)

                                         aaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtttt                                                 >  1:1280918/1‑91 (MQ=255)

                                         aaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtttt                                                 <  1:12779/91‑1 (MQ=255)

                                              aaGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAAt                                            <  1:3744772/91‑1 (MQ=255)

                                               aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                           >  1:2325485/1‑91 (MQ=255)

                                                gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                          >  1:3828265/1‑91 (MQ=255)

                                                gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                          >  1:3825378/1‑91 (MQ=255)

                                                gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                          >  1:1037899/1‑91 (MQ=255)

                                                gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                          >  1:114653/1‑91 (MQ=255)

                                                gCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGc                                          >  1:295109/1‑91 (MQ=255)

                                                  ttcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCACGATATGGCTAATCACCTTTTTCACTGCAg                                        >  1:1320351/1‑91 (MQ=255)

                                                   tcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGa                                       <  1:1619566/91‑1 (MQ=255)

                                                     ttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAAc                                     <  1:1135327/91‑1 (MQ=255)

                                                      tAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACa                                    >  1:4128902/1‑91 (MQ=255)

                                                        aTCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACaaa                                  <  1:1495264/91‑1 (MQ=255)

                                                          cAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAaga                                >  1:3081349/1‑91 (MQ=255)

                                                           aagaCCCTGGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAagag                               <  1:1046986/88‑1 (MQ=255)

                                                           aaTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAagag                               <  1:199582/91‑1 (MQ=255)

                                                              aCCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGtat                            >  1:747651/1‑91 (MQ=255)

                                                                 cTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATAtt                         >  1:1310466/1‑91 (MQ=255)

                                                                    gATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTg                      >  1:2551976/1‑91 (MQ=255)

                                                                     aTTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGc                     <  1:1637164/91‑1 (MQ=255)

                                                                       tACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaa                   <  1:3050864/91‑1 (MQ=255)

                                                                         cAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaaaa                 <  1:1530398/91‑1 (MQ=255)

                                                                          aaaaTAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCGTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAAt                >  1:2490007/1‑91 (MQ=255)

                                                                            aataaatTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCa              >  1:488177/1‑91 (MQ=255)

                                                                                aatTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAatat          >  1:2495675/1‑91 (MQ=255)

                                                                                  ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt        <  1:1560440/91‑1 (MQ=255)

                                                                                  ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt        <  1:3637886/91‑1 (MQ=255)

                                                                                    cAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtat      <  1:1788415/91‑1 (MQ=255)

                                                                                       cTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAt   >  1:3877452/1‑91 (MQ=255)

                                                                                        tAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAtt  <  1:1199050/91‑1 (MQ=255)

                                                                                        tAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAtt  <  1:3701731/91‑1 (MQ=255)

TTAATCTCATTAGTAATTCTATTTATGATTTTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATT  >  USA300TCH1516_ALE/1901221‑1901399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.