| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1909669 | 101 (1.030) | 5 (0.060) | 4/146 | NT | 5.0% | intergenic (+173/‑83) | USA300HOU_RS09460/crcB_1 | hypothetical protein/Putative fluoride ion transporter CrcB |
| ? | USA300TCH1516_ALE | = 1909705 | 96 (1.070) | intergenic (+209/‑47) | USA300HOU_RS09460/crcB_1 | hypothetical protein/Putative fluoride ion transporter CrcB | |||||
ACGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1909574‑1909669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggtttTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCATAG < USA300TCH1516_ALE/1909705‑1909616 ACGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGA > 1:3063978/1‑91ACGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGA > 1:179680/1‑91 CGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAG > 1:1216734/1‑91 CGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAG < 1:3447203/91‑1 CGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAG < 1:1185473/91‑1 CGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAG < 1:1276705/91‑1 CGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAG > 1:1216782/1‑91 GTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGG < 1:2021174/91‑1 GTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGG > 1:283392/1‑91 GTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGG < 1:372152/91‑1 TTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGT < 1:1224322/91‑1 TTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGT < 1:2764267/91‑1 TGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTT < 1:39055/91‑1 TATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAA < 1:140936/91‑1 GCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACC < 1:2410435/91‑1 CATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTTGGCAACGCGACGACAAAGATTGTCGATGCATTATCAAACCT < 1:2195334/91‑1 CATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCT < 1:3153102/91‑1 AATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTA < 1:898884/91‑1 GAGGTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGAT > 1:4080355/1‑91 GAGGTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGAT > 1:622321/1‑91 GAGGTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGAT < 1:1810479/91‑1 GAGGATTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGAT > 1:3276133/1‑91 AGGTCTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATG < 1:3460942/91‑1 GTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCA > 1:33111/1‑91 GTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCA > 1:32603/1‑91 GTTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCA > 1:1992474/1‑91 TTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCAT < 1:3720213/91‑1 TTTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCAT > 1:466124/1‑91 TTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCATA > 1:3240767/1‑91 TTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCATA > 1:760873/1‑91 TTTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCATA > 1:760930/1‑91 TTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCATAG < 1:3483794/91‑1 ACGTTGTTGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1909574‑1909669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggtttTGGCAACGCGACGACAAAAATTGTCGATGCATTATCAAACCTCATTATATGTTATATCTTGTTGTATAACTATAGCGATTAGATGCATAG < USA300TCH1516_ALE/1909705‑1909616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |