BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1909669	101 (1.030)	5 (0.060)	4/146	NT	5.0%	intergenic (+173/‑83)	USA300HOU_RS09460/crcB_1	hypothetical protein/Putative fluoride ion transporter CrcB
*	?	USA300TCH1516_ALE	= 1909705	96 (1.070)	5 (0.060)	4/146	NT	5.0%	intergenic (+209/‑47)	USA300HOU_RS09460/crcB_1	hypothetical protein/Putative fluoride ion transporter CrcB

Only 100 of 135 total aligned reads displayed.

ACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTAGGCGCTT  >  USA300TCH1516_ALE/1909615‑1909794

aCTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCa                                                                                           <  1:11672/91‑1 (MQ=255)

  tATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaa                                                                                         >  1:760873‑M2/1‑89 (MQ=255)

  tATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaa                                                                                         >  1:3240767‑M2/1‑89 (MQ=255)

   aTGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaa                                                                                        >  1:466124‑M2/1‑88 (MQ=255)

    tGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaac                                                                                       >  1:33111‑M2/1‑87 (MQ=255)

    tGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaac                                                                                       >  1:32603‑M2/1‑87 (MQ=255)

      cATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAagacct                                                                                     <  1:3460942‑M2/91‑7 (MQ=255)

       aTCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaatcctc                                                                                    >  1:3276133‑M2/1‑84 (MQ=255)

       aTCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctc                                                                                    <  1:1810479‑M2/91‑8 (MQ=255)

       aTCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctc                                                                                    >  1:622321‑M2/1‑84 (MQ=255)

        tCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACctct                                                                                   >  1:3562242/1‑91 (MQ=255)

        tCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACctct                                                                                   >  1:3562504/1‑91 (MQ=255)

         cTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGTATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCtt                                                                                  <  1:3501291/91‑1 (MQ=255)

         cTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCtt                                                                                  <  1:1418059/91‑1 (MQ=255)

         cTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCtt                                                                                  <  1:1306534/91‑1 (MQ=255)

          tAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttt                                                                                 <  1:1518267/91‑1 (MQ=255)

          tAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttt                                                                                 <  1:2415621/91‑1 (MQ=255)

          tAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttt                                                                                 <  1:3837914/91‑1 (MQ=255)

          tAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttt                                                                                 <  1:3837763/91‑1 (MQ=255)

           aaTCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCtttt                                                                                <  1:3238207/91‑1 (MQ=255)

            aTCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttttt                                                                               >  1:3741459/1‑91 (MQ=255)

            aTCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttttt                                                                               >  1:3741607/1‑91 (MQ=255)

              cGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTa                                                                             >  1:1945546/1‑91 (MQ=255)

              cGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTa                                                                             <  1:3613341/91‑1 (MQ=255)

              cGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTa                                                                             >  1:884010/1‑91 (MQ=255)

              cGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTa                                                                             >  1:2556830/1‑91 (MQ=255)

               gCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTaa                                                                            >  1:2929696/1‑91 (MQ=255)

                cTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTaaa                                                                           >  1:2893539/1‑91 (MQ=255)

                cTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTaaa                                                                           >  1:2893241/1‑91 (MQ=255)

                 tataGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAAt                                                                          <  1:3747071/91‑1 (MQ=255)

                   taGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTc                                                                        <  1:3941987/91‑1 (MQ=255)

                     gTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCaa                                                                      >  1:2169931/1‑91 (MQ=255)

                     gTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCaa                                                                      >  1:2585672/1‑91 (MQ=255)

                        ataCAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAact                                                                   <  1:1523192/91‑1 (MQ=255)

                         taCAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAacta                                                                  >  1:10165/1‑91 (MQ=255)

                         taCAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAacta                                                                  <  1:1088485/91‑1 (MQ=255)

                          acaacaAGATATAACATATAATGAGGTTTGATAAAGCATCGACAATTTTTGTAGTCGAGTTGCCAAAACCGCTGTTTTAAATGCAAactac                                                                 >  1:1785224/1‑91 (MQ=255)

                           caacaaGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAactact                                                                >  1:2522390/1‑91 (MQ=255)

                           caacaaGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAactact                                                                <  1:134410/91‑1 (MQ=255)

                            aacaaGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTActt                                                               <  1:1494607/91‑1 (MQ=255)

                              caaGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTActtct                                                             <  1:2989712/91‑1 (MQ=255)

                                 gATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCtttt                                                          <  1:2679727/91‑1 (MQ=255)

                                  atatAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTc                                                         <  1:1050179/91‑1 (MQ=255)

                                   tataACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCg                                                        <  1:507080/91‑1 (MQ=255)

                                   tataACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCg                                                        <  1:507094/91‑1 (MQ=255)

                                     taACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAg                                                      >  1:3949923/1‑91 (MQ=255)

                                     taACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAg                                                      >  1:164700/1‑91 (MQ=255)

                                     taACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAg                                                      >  1:3403383/1‑91 (MQ=255)

                                     taACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAg                                                      >  1:1988393/1‑91 (MQ=255)

                                      aaCATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAgg                                                     <  1:3602650/91‑1 (MQ=255)

                                       aCATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGt                                                    >  1:980868/1‑91 (MQ=255)

                                       aCATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGt                                                    <  1:2221825/91‑1 (MQ=255)

                                        cATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTg                                                   <  1:1847799/91‑1 (MQ=255)

                                          tataATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGaa                                                 >  1:974653/1‑91 (MQ=255)

                                          tataATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGaa                                                 >  1:1288062/1‑91 (MQ=255)

                                           ataATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAAc                                                <  1:1491235/91‑1 (MQ=255)

                                            taATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctcattatatgttatatcttgttgtataactatagcgatt                                               <  1:898884‑M2/91‑45 (MQ=255)

                                            taATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAAcc                                               <  1:2065133/91‑1 (MQ=255)

                                             aaTGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCa                                              <  1:2534166/91‑1 (MQ=255)

                                             aaTGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCa                                              <  1:2022210/91‑1 (MQ=255)

                                                gAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAAt                                           <  1:2433803/91‑1 (MQ=255)

                                                 aGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctcattatatgttatatcttgttgtataactatagcgattagatg                                          <  1:3153102‑M2/91‑50 (MQ=255)

                                                 aGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATg                                          >  1:2253093/1‑91 (MQ=255)

                                                 aGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATg                                          <  1:668855/91‑1 (MQ=255)

                                                  ggTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctcattatatgttatatcttgttgtataactatagcgattagatgc                                         <  1:2410435‑M2/91‑51 (MQ=255)

                                                  ggTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGc                                         >  1:2316162/1‑91 (MQ=255)

                                                    tttGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCaa                                       >  1:354958/1‑91 (MQ=255)

                                                     ttGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctcattatatgttatatcttgttgtataactatagcgattagatgcata                                      <  1:140936‑M2/91‑54 (MQ=255)

                                                        aTAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATg                                   >  1:846091/1‑91 (MQ=255)

                                                            tGCAGCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGtata                               <  1:3456732/91‑1 (MQ=255)

                                                              cATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGtatata                             >  1:3373069/1‑91 (MQ=255)

                                                               aTCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTatatat                            >  1:186557/1‑91 (MQ=255)

                                                               aTCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTGCTTTTCTAGGTGAACCAAATGCAATATGTagatat                            >  1:186877/1‑91 (MQ=255)

                                                                tCGACACTTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATAtt                           >  1:3231986/1‑91 (MQ=255)

                                                                tCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATAtt                           <  1:3084982/91‑1 (MQ=255)

                                                                 cGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATAttt                          <  1:1221280/91‑1 (MQ=255)

                                                                  gACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATAtttt                         <  1:3269644/91‑1 (MQ=255)

                                                                   aCAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATAttttt                        >  1:2673546/1‑91 (MQ=255)

                                                                    cAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTa                       >  1:2010295/1‑91 (MQ=255)

                                                                    cAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTa                       >  1:1065505/1‑91 (MQ=255)

                                                                    cAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTa                       >  1:2010078/1‑91 (MQ=255)

                                                                      aaaattGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATc                     >  1:2843074/5‑91 (MQ=255)

                                                                        ttttGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCgg                   <  1:389697/91‑1 (MQ=255)

                                                                        ttttGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCgg                   >  1:2353884/1‑91 (MQ=255)

                                                                        aattGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCgg                   >  1:2339317/3‑91 (MQ=255)

                                                                          ttGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCggtg                 <  1:3518316/91‑1 (MQ=255)

                                                                          ttGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCggtg                 <  1:3518238/91‑1 (MQ=255)

                                                                           tGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCggtgg                <  1:1665553/91‑1 (MQ=255)

                                                                              cgtcgCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGc             >  1:2561552/1‑91 (MQ=255)

                                                                              cgtcgCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGc             <  1:2536669/91‑1 (MQ=255)

                                                                                tcgCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCtt           <  1:1813222/91‑1 (MQ=255)

                                                                                tcgCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCtt           <  1:1119814/91‑1 (MQ=255)

                                                                                tcgCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCtt           <  1:4015776/91‑1 (MQ=255)

                                                                                  gcgTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTa         <  1:112133/91‑1 (MQ=255)

                                                                                  gcgTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTa         <  1:1468652/91‑1 (MQ=255)

                                                                                  gcgTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTa         <  1:1528735/91‑1 (MQ=255)

                                                                                    gTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTAgg       <  1:1966545/91‑1 (MQ=255)

                                                                                      tGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTAGgcg     <  1:2030521/91‑1 (MQ=255)

                                                                                        ccAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTAGGCGCt   >  1:1595802/1‑91 (MQ=255)

                                                                                         cAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTAGGCGCtt  >  1:1179351/1‑91 (MQ=255)

ACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAATATGTATATATTTTTATCGGTGGTGCTTTAGGCGCTT  >  USA300TCH1516_ALE/1909615‑1909794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.