| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1909669 | 101 (1.030) | 5 (0.060) | 4/146 | NT | 5.0% | intergenic (+173/‑83) | USA300HOU_RS09460/crcB_1 | hypothetical protein/Putative fluoride ion transporter CrcB |
| ? | USA300TCH1516_ALE | = 1909705 | 96 (1.070) | intergenic (+209/‑47) | USA300HOU_RS09460/crcB_1 | hypothetical protein/Putative fluoride ion transporter CrcB | |||||
Only 100 of 145 total aligned reads displayed.
TGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAAT > USA300TCH1516_ALE/1909581‑1909758 | gCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGAt > 1:1834946/1‑91 (MQ=255) cGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATa < 1:1190964/91‑1 (MQ=255) taAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGc < 1:701595/91‑1 (MQ=255) taAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGc < 1:2608704/91‑1 (MQ=255) aaaaaTATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCAt > 1:2216572/1‑91 (MQ=255) aaaTATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCg < 1:682642/91‑1 (MQ=255) atatTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGAc > 1:1118253/1‑91 (MQ=255) atatTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGAc < 1:197583/91‑1 (MQ=255) atatTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGAc < 1:2322280/91‑1 (MQ=255) tatTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACa > 1:1835654/1‑91 (MQ=255) atTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACaa < 1:2300458/91‑1 (MQ=255) atTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACaa > 1:1773173/1‑91 (MQ=255) ttAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACCTATAATGAGGTTTGATAATGCATCGACAAt > 1:1111407/1‑91 (MQ=255) ttAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAAt < 1:2902866/91‑1 (MQ=255) tAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAAtt < 1:1570860/91‑1 (MQ=255) gATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAAtttt > 1:4079998/1‑91 (MQ=255) gATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAAtttt < 1:1296882/91‑1 (MQ=255) gATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAAtttt > 1:4080536/1‑91 (MQ=255) tttCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTgt < 1:2916878/91‑1 (MQ=255) tCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGt > 1:13523/1‑91 (MQ=255) tCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGt > 1:13522/1‑91 (MQ=255) tCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGt < 1:1969835/91‑1 (MQ=255) aTAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTg > 1:2095879/1‑91 (MQ=255) cTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAa < 1:3483794‑M2/91‑2 (MQ=255) tATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaa > 1:760930‑M2/1‑89 (MQ=255) tATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaa > 1:3240767‑M2/1‑89 (MQ=255) aTGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaa < 1:3720213‑M2/91‑4 (MQ=255) aTGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaa > 1:466124‑M2/1‑88 (MQ=255) tGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaac > 1:32603‑M2/1‑87 (MQ=255) tGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaac > 1:33111‑M2/1‑87 (MQ=255) tGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaac > 1:1992474‑M2/1‑87 (MQ=255) gCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTtggcaacgcgacgacaaaaattgtcgatgcattatcaaacc < 1:2410435‑M1/91‑42 (MQ=255) cATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTtggcaacgcgacgacaaagattgtcgatgcattatcaaacct < 1:2195334‑M1/91‑43 (MQ=255) cATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAagacct < 1:3460942‑M2/91‑7 (MQ=255) aTCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaatcctc > 1:3276133‑M2/1‑84 (MQ=255) aTCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctc > 1:4080355‑M2/1‑84 (MQ=255) aTCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctc > 1:622321‑M2/1‑84 (MQ=255) tCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACctct > 1:3562242/1‑91 (MQ=255) cTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGTATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCtt < 1:3501291/91‑1 (MQ=255) cTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCtt < 1:1306534/91‑1 (MQ=255) cTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCtt < 1:1418059/91‑1 (MQ=255) tAATCGCTATATTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttt < 1:3767725/91‑1 (MQ=255) tAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttt < 1:3837763/91‑1 (MQ=255) tAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttt < 1:1518267/91‑1 (MQ=255) tAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttt > 1:2542515/1‑91 (MQ=255) aaTCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTtggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcatta < 1:898884‑M1/91‑48 (MQ=255) aaTCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCtttt < 1:3238207/91‑1 (MQ=255) aTCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttttt > 1:3741607/1‑91 (MQ=255) aTCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCttttt > 1:3741459/1‑91 (MQ=255) cGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTa > 1:2556830/1‑91 (MQ=255) cGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTa > 1:884010/1‑91 (MQ=255) cTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTaaa > 1:2893241/1‑91 (MQ=255) ataGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAAtt > 1:147544/1‑91 (MQ=255) taGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTc < 1:3941987/91‑1 (MQ=255) aGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCa > 1:1352413/1‑91 (MQ=255) gTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCaa > 1:2169931/1‑91 (MQ=255) taCAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAacta > 1:10165/1‑91 (MQ=255) acaacaAGATATAACATATAATGAGGTTTGATAAAGCATCGACAATTTTTGTAGTCGAGTTGCCAAAACCGCTGTTTTAAATGCAAactac > 1:1785224/1‑91 (MQ=255) caacaaGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAactact > 1:2522390/1‑91 (MQ=255) aacaaGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTActt > 1:3525735/1‑91 (MQ=255) caaGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTActtct < 1:2989597/91‑1 (MQ=255) caaGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTActtct < 1:2989712/91‑1 (MQ=255) gATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCtttt < 1:2679727/91‑1 (MQ=255) gATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCtttt < 1:928655/91‑1 (MQ=255) gATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCtttt < 1:152113/91‑1 (MQ=255) atatAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTc < 1:1050179/91‑1 (MQ=255) atatAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTc < 1:1870078/91‑1 (MQ=255) tataACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCg < 1:507094/91‑1 (MQ=255) tataACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCg < 1:507080/91‑1 (MQ=255) ataACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGa < 1:1077182/91‑1 (MQ=255) taACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAg > 1:3403383/1‑91 (MQ=255) taACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAg > 1:124015/1‑91 (MQ=255) taACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAg > 1:164700/1‑91 (MQ=255) taACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAg > 1:3949923/1‑91 (MQ=255) aaCATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAgg < 1:3602650/91‑1 (MQ=255) aaCATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTACCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAgg < 1:3593057/91‑1 (MQ=255) aCATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGt < 1:2221825/91‑1 (MQ=255) cATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTg < 1:1847799/91‑1 (MQ=255) tataATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGaa > 1:974653/1‑91 (MQ=255) ataATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAAc < 1:1491235/91‑1 (MQ=255) taATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAAcc < 1:2065133/91‑1 (MQ=255) aaTGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCa < 1:2022210/91‑1 (MQ=255) gAGGTTTtggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagat < 1:1810479‑M1/91‑85 (MQ=255) gAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAAt < 1:2433803/91‑1 (MQ=255) gAGGATTtggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagat > 1:3276133‑M1/1‑7 (MQ=255) aGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctcattatatgttatatcttgttgtataactatagcgattagatg < 1:3153102‑M2/91‑50 (MQ=255) aGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATg > 1:2253093/1‑91 (MQ=255) aGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATg > 1:2363370/1‑91 (MQ=255) aGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATg < 1:668855/91‑1 (MQ=255) aGGTCTtggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagatg < 1:3460942‑M1/91‑86 (MQ=255) ggTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctcattatatgttatatcttgttgtataactatagcgattagatgc < 1:2410435‑M2/91‑51 (MQ=255) ggTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGc > 1:2316162/1‑91 (MQ=255) gTTTtggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagatgca > 1:1992474‑M1/1‑4 (MQ=255) ttttggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagatgcat < 1:3720213‑M1/91‑89 (MQ=255) ttttggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagatgcat > 1:466124‑M1/1‑3 (MQ=255) tttGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCaa > 1:354958/1‑91 (MQ=255) tttggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagatgcata > 1:760873‑M1/1‑2 (MQ=255) tttggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagatgcata > 1:760930‑M1/1‑2 (MQ=255) tttggcaacgcgacgacaaaaattgtcgatgcattatcaaacctcattatatgttatatcttgttgtataactatagcgattagatgcata > 1:3240767‑M1/1‑2 (MQ=255) ttGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAaaacctcattatatgttatatcttgttgtataactatagcgattagatgcata < 1:140936‑M2/91‑54 (MQ=255) | TGCGTATAAAAAATATTAGATTTTCGAAATCATAACTATGCATCTAATCGCTATAGTTATACAACAAGATATAACATATAATGAGGTTTGATAATGCATCGACAATTTTTGTCGTCGCGTTGCCAAAACCTCTTTTTTAAATTCAAACTACTTCTTTTCGAGGTGAACCAAATGCAAT > USA300TCH1516_ALE/1909581‑1909758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |