| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1915879 = | 98 (1.000) | 6 (0.060) | 4/156 | NT | 5.6% | intergenic (‑58/‑313) | metK/pckA | S‑adenosylmethionine synthase/Phosphoenolpyruvate carboxykinase (ATP) |
| ? | USA300TCH1516_ALE | 1915913 = | 107 (1.120) | intergenic (‑92/‑279) | metK/pckA | S‑adenosylmethionine synthase/Phosphoenolpyruvate carboxykinase (ATP) | |||||
AGGTGCCAAACCGTTTGCAGACAAATAGGTCTGAACGATAAGAGCGAATGGACGTATTAGGCCTTCTCTCTATATTAATAGTTAGAAGGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1915970‑1915879‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCACCTTTCTTTTATAAAAAAGAGGTTGCTGGGTTTCA > USA300TCH1516_ALE/1915913‑1916002 AGGTGCCAAACCGTTTGCAGACAAATAGGTCTGAACGATAAGAGCGAATGGACGTATTAGGCCTTCTCTCTATATTAATAGTTAGAAGGTC > 1:115366/1‑91AGGTGCCAAACCGTTTGCAGACAAATAGGTCTGAACGATAAGAGCGAATGGACGTATTAGGCCTTCTCTCTATATTAATAGTTAGAAGGTC < 1:137021/91‑1 TATTAGGCCTTCTCTCTATATTAATAGTTAGAAGGTCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGG > 1:3472055/1‑91 TATTAGGCCTTCTCTCTATATTAATAGTTAGAAGGTCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGG > 1:3472441/1‑91 AGGCCTTCTCTCTATATTAATAGTTAGAAGGTCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCACC > 1:3889239/1‑91 GCCTTCTCTCTATATTAATAGTTAGAAGGTCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCACCTT > 1:3052138/1‑91 CTTCTCTCTATATTAATAGTTAGAAGGTCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCACCTTTC > 1:2161641/1‑91 CTTCTCTCTATATTAATAGTTAGAAGGTCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCACCTTTC > 1:2163486/1‑91 TAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCACCTTTCTTTTATAAAAAAGAGGTTGCTGGGTTTCA > 1:4128521/1‑91 AGGTGCCAAACCGTTTGCAGACAAATAGGTCTGAACGATAAGAGCGAATGGACGTATTAGGCCTTCTCTCTATATTAATAGTTAGAAGGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1915970‑1915879‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCACCTTTCTTTTATAAAAAAGAGGTTGCTGGGTTTCA > USA300TCH1516_ALE/1915913‑1916002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |