BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1915879 =	98 (1.000)	6 (0.060)	4/156	NT	5.6%	intergenic (‑58/‑313)	metK/pckA	S‑adenosylmethionine synthase/Phosphoenolpyruvate carboxykinase (ATP)
*	?	USA300TCH1516_ALE	1915913 =	107 (1.120)	6 (0.060)	4/156	NT	5.6%	intergenic (‑92/‑279)	metK/pckA	S‑adenosylmethionine synthase/Phosphoenolpyruvate carboxykinase (ATP)

Only 100 of 124 total aligned reads displayed.

CTCTGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCAC  >  USA300TCH1516_ALE/1915789‑1915968

tgaaacccagcaacctcttttttataaaagaaaggtgccaaaccgtttgcagacaaataggtctgaacgataagagcgaatggacgtatta                                                                                           >  1:4128521‑M1/91‑91 (MQ=255)

 tctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAg                                                                                          <  1:2056115/91‑1 (MQ=255)

 tctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAg                                                                                          <  1:4042906/91‑1 (MQ=255)

 tctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAg                                                                                          <  1:4043011/91‑1 (MQ=255)

 tctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAg                                                                                          <  1:2056940/91‑1 (MQ=255)

 tctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAg                                                                                          >  1:4053152/1‑91 (MQ=255)

  ctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGa                                                                                         <  1:2379041/91‑1 (MQ=255)

  ctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGa                                                                                         >  1:2087260/1‑91 (MQ=255)

  ctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGa                                                                                         >  1:2087873/1‑91 (MQ=255)

  ctGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGa                                                                                         >  1:2818504/1‑91 (MQ=255)

   tGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGAc                                                                                        <  1:3429253/91‑1 (MQ=255)

   tGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGAc                                                                                        <  1:3430838/91‑1 (MQ=255)

     aaGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCt                                                                                      >  1:481535/1‑91 (MQ=255)

      aGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCtt                                                                                     >  1:2206868/1‑91 (MQ=255)

       gTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTc                                                                                    <  1:2296490/91‑1 (MQ=255)

       gTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTc                                                                                    >  1:921519/1‑91 (MQ=255)

       gTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTc                                                                                    >  1:1565413/1‑91 (MQ=255)

          aataatCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTaa                                                                                 >  1:1804749/1‑91 (MQ=255)

          aataatCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTaa                                                                                 >  1:3742252/1‑91 (MQ=255)

          aataatCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTaa                                                                                 >  1:3742110/1‑91 (MQ=255)

            taatCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACt                                                                               >  1:3373854/1‑91 (MQ=255)

             aatCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTa                                                                              <  1:3094890/91‑1 (MQ=255)

              atCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTAt                                                                             <  1:3775326/91‑1 (MQ=255)

                     gTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAAtata                                                                      <  1:2370105/91‑1 (MQ=255)

                      ttATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATag                                                                     <  1:1263539/91‑1 (MQ=255)

                       tATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATaga                                                                    >  1:2422308/1‑91 (MQ=255)

                       tATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATaga                                                                    >  1:2422867/1‑91 (MQ=255)

                       tATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATaga                                                                    <  1:1198788/91‑1 (MQ=255)

                        aTTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATagag                                                                   <  1:1433530/91‑1 (MQ=255)

                        aTTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATagag                                                                   <  1:2459487/91‑1 (MQ=255)

                        aTTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTATCTCTATGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATagag                                                                   >  1:1558706/1‑91 (MQ=255)

                         tttAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATagaga                                                                  <  1:3942261/91‑1 (MQ=255)

                          ttAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATagagag                                                                 <  1:1385047/91‑1 (MQ=255)

                          ttAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATagagag                                                                 <  1:3281013/91‑1 (MQ=255)

                           tAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAgagaga                                                                <  1:2683738/91‑1 (MQ=255)

                           tAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAgagaga                                                                >  1:1326855/1‑91 (MQ=255)

                             gaaaggtgccaaaccgtttgcagacaaataggtctgaacgataagagcgaatggacgtattAGACCTTCTAACTATTAATATAGAGAGAAg                                                              >  1:2163486‑M1/62‑91 (MQ=255)

                             gaaaggtgccaaaccgtttgcagacaaataggtctgaacgataagagcgaatggacgtattAGACCTTCTAACTATTAATATAGAGAGAAg                                                              >  1:2161641‑M1/62‑91 (MQ=255)

                              cATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAgg                                                             >  1:244329/1‑91 (MQ=255)

                              cATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAgg                                                             >  1:4179/1‑91 (MQ=255)

                                  gTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTa                                                         >  1:1271817/1‑91 (MQ=255)

                                     ccaaaccgtttgcagacaaataggtctgaacgataagagcgaatggacgtattAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATa                                                      >  1:3472055‑M1/54‑91 (MQ=255)

                                     ccaaaccgtttgcagacaaataggtctgaacgataagagcgaatggacgtattAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATa                                                      >  1:3472441‑M1/54‑91 (MQ=255)

                                      gCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATAc                                                     <  1:2767094/91‑1 (MQ=255)

                                      gCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATAc                                                     >  1:981460/1‑91 (MQ=255)

                                       cTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACg                                                    <  1:3872611/91‑1 (MQ=255)

                                       cTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACg                                                    <  1:946303/91‑1 (MQ=255)

                                        tCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGt                                                   <  1:59734/91‑1 (MQ=255)

                                        tCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGt                                                   <  1:1846265/91‑1 (MQ=255)

                                           tttAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCa                                                >  1:3184430/1‑91 (MQ=255)

                                           tttAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCa                                                <  1:2230781/91‑1 (MQ=255)

                                           tttAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCa                                                <  1:1475892/91‑1 (MQ=255)

                                               aaTTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCg                                            <  1:3244892/91‑1 (MQ=255)

                                                 tttATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGct                                          <  1:772315/91‑1 (MQ=255)

                                                  ttATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGctc                                         <  1:3872832/91‑1 (MQ=255)

                                                  ttATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGctc                                         <  1:1223743/91‑1 (MQ=255)

                                                  ttATATTACGAAAATTCTCTCTCTGAGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGctc                                         <  1:3873107/91‑1 (MQ=255)

                                                   tataTTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGctct                                        >  1:1483554/1‑91 (MQ=255)

                                                   tataTTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGctct                                        >  1:1866975/1‑91 (MQ=255)

                                                     tatTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTa                                      <  1:2060257/91‑1 (MQ=255)

                                                      atTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTAt                                     <  1:879290/91‑1 (MQ=255)

                                                       ttACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATc                                    >  1:2900699/1‑91 (MQ=255)

                                                       ttACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATc                                    >  1:3961138/1‑91 (MQ=255)

                                                        tACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCg                                   <  1:916044/91‑1 (MQ=255)

                                                        tACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCg                                   >  1:1224310/1‑91 (MQ=255)

                                                         aCGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGt                                  >  1:311764/1‑91 (MQ=255)

                                                          cGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGtt                                 >  1:2237405/1‑91 (MQ=255)

                                                          cGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGtt                                 <  1:333638/91‑1 (MQ=255)

                                                            aaaaTTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCa                               <  1:3103809/91‑1 (MQ=255)

                                                               aTTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGAc                            <  1:3725220/91‑1 (MQ=255)

                                                                ttCTCTCTCTGTGAGCTAAATAAAACAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGAcc                           <  1:3867155/91‑1 (MQ=255)

                                                                ttCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGAcc                           >  1:2669594/1‑91 (MQ=255)

                                                                ttCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGAcc                           <  1:681036/91‑1 (MQ=255)

                                                                    ctctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTAtt                       >  1:1872574/1‑91 (MQ=255)

                                                                    ctctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTAtt                       >  1:1872911/1‑91 (MQ=255)

                                                                    ctctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTAtt                       >  1:2530361/1‑91 (MQ=255)

                                                                    ctctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTAtt                       >  1:2530481/1‑91 (MQ=255)

                                                                     tctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTAttt                      <  1:801013/91‑1 (MQ=255)

                                                                     tctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTAttt                      >  1:3012055/1‑91 (MQ=255)

                                                                     tctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTAttt                      <  1:2609697/91‑1 (MQ=255)

                                                                      ctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTg                     >  1:1420357/1‑91 (MQ=255)

                                                                      ctctGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTg                     <  1:676246/91‑1 (MQ=255)

                                                                         tgtgAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCt                  <  1:885095/91‑1 (MQ=255)

                                                                         tgtgAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCt                  <  1:2581778/91‑1 (MQ=255)

                                                                         tgtgAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCt                  >  1:4072288/1‑91 (MQ=255)

                                                                         tgtgAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCt                  >  1:1457114/1‑91 (MQ=255)

                                                                         tgtgAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCt                  <  1:1837140/91‑1 (MQ=255)

                                                                             aGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCaa              <  1:4001841/91‑1 (MQ=255)

                                                                             aGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCaa              <  1:1869029/91‑1 (MQ=255)

                                                                              gCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCaaa             >  1:1292174/1‑91 (MQ=255)

                                                                              gCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCaaa             <  1:4072117/91‑1 (MQ=255)

                                                                               cTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAAc            >  1:1816765/1‑91 (MQ=255)

                                                                               cTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAAc            >  1:280040/1‑91 (MQ=255)

                                                                                 aaataaaAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACgg          <  1:483331/91‑1 (MQ=255)

                                                                                  aataaaAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGt         >  1:2215639/1‑91 (MQ=255)

                                                                                    taaaAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGttt       <  1:4077565/91‑1 (MQ=255)

                                                                                    taaaAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGttt       >  1:2319027/1‑91 (MQ=255)

                                                                                      aaaaaGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTgg     >  1:1051304/1‑91 (MQ=255)

                                                                                       aaaaGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGc    <  1:122744/91‑1 (MQ=255)

                                                                                       aaaaGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGc    <  1:609179/91‑1 (MQ=255)

CTCTGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCGCTCTTATCGTTCAGACCTATTTGTCTGCAAACGGTTTGGCAC  >  USA300TCH1516_ALE/1915789‑1915968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.