| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1918322 = | 60 (0.610) | 4 (0.040) | 3/146 | NT | 5.6% | intergenic (‑40/+458) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1918351 = | 80 (0.890) | intergenic (‑69/+429) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
GAGATGCTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1918418‑1918322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTT > USA300TCH1516_ALE/1918351‑1918439 GAGATGCTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGA > 1:1089088/1‑91GAGATGCTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGA < 1:928157/91‑1 AGATGCTATTTAATGTCATCTGACACAAACAGCTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAA > 1:563219/1‑91 GATGCTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAG < 1:557627/91‑1 TGCTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGAC < 1:4122073/91‑1 TGCTATTTAATGGCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGAC < 1:4121969/91‑1 CTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGACAA > 1:1539256/1‑91 CTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGACAA < 1:400583/91‑1 CTATTTAATATCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGACAA < 1:333715/91‑1 CTATTTAATATCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGACAA < 1:333695/91‑1 TACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAAC > 1:3226555/1‑91 ACATATTGTCTTTGCACCTAAATACAGAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTA > 1:2494750/1‑91 CATATTGTCTTTGCACCTAAATACAGAAGACAATATGTTACTTACAATTCCATTTCGTATGTGCTAAACTGTTTGTGTCAGATGACATTAA > 1:979705/1‑91 TTGTCTTTGCACCTAAATACAGAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAG > 1:1639956/1‑91 AAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTT < 1:1208071/91‑1 GACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTG > 1:2177069/1‑91 GACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTG > 1:2101468/1‑91 GACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTG < 1:1583467/91‑1 ACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGG < 1:611461/91‑1 ACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGG < 1:611539/91‑1 CAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGT < 1:2426874/91‑1 CAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGT > 1:1103399/1‑91 AATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTT > 1:1724177/1‑91 AATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTT > 1:3908552/1‑91 AATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTT > 1:1723589/1‑91 AATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTT > 1:1723568/1‑91 AATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTT > 1:1723448/1‑91 AATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTAGTT > 1:3348954/1‑91 GAGATGCTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTGCACCTAAATACAGAAGACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1918418‑1918322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTT > USA300TCH1516_ALE/1918351‑1918439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |