BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1918322 =	60 (0.610)	4 (0.040)	3/146	NT	5.6%	intergenic (‑40/+458)	USA300HOU_RS07235/USA300HOU_RS09510	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1918351 =	80 (0.890)	4 (0.040)	3/146	NT	5.6%	intergenic (‑69/+429)	USA300HOU_RS07235/USA300HOU_RS09510	hypothetical protein/hypothetical protein

Only 100 of 124 total aligned reads displayed.

TTTCACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGG  >  USA300TCH1516_ALE/1918264‑1918441

ttaatgtcatctgacacaaacagtttagcacatacgaaatggaattgtaagtaacataTTGTCTTCTGTATTTAGGTGCAAAGACAATATg                                                                                         >  1:979705‑M1/59‑91 (MQ=255)

 ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt                                                                                        <  1:4013341/91‑1 (MQ=31)

 ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt                                                                                        <  1:3065716/91‑1 (MQ=31)

 ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt                                                                                        >  1:1013873/1‑91 (MQ=31)

 ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt                                                                                        >  1:23739/1‑91 (MQ=31)

 taatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt                                                                                        >  1:2494750‑M1/58‑91 (MQ=255)

   cacaTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGtta                                                                                      <  1:2826653/91‑1 (MQ=33)

   cacaTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGtta                                                                                      <  1:1653169/91‑1 (MQ=33)

     caTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGttact                                                                                    >  1:3004166/1‑91 (MQ=34)

     caTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGttact                                                                                    <  1:3984835/91‑1 (MQ=34)

         aTTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACa                                                                                >  1:2278418/1‑91 (MQ=34)

         aTTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACa                                                                                >  1:2278499/1‑91 (MQ=34)

         aTTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACa                                                                                >  1:2887298/1‑91 (MQ=34)

          ttGACGCAATATAATCCCTATAACTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGATGCAAAGACAATATGTTACTTACaa                                                                               >  1:3870944/1‑91 (MQ=16)

                   tataATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCAtttt                                                                      <  1:2122996/91‑1 (MQ=34)

                     taATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGt                                                                    >  1:657942/1‑91 (MQ=34)

                     taATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGt                                                                    >  1:1445306/1‑91 (MQ=34)

                      gtttagcacatacaaaatggaattgtaagtaacataTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTa                                                                   >  1:3226555‑M1/37‑91 (MQ=255)

                      aaTCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTa                                                                   >  1:3435117/1‑91 (MQ=34)

                         cccTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTAtgt                                                                >  1:2839253/1‑91 (MQ=33)

                         cccTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTAtgt                                                                <  1:2472164/91‑1 (MQ=34)

                         cccTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTAtgt                                                                >  1:2838513/1‑91 (MQ=34)

                          ccTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTAtgtg                                                               >  1:1861706/1‑91 (MQ=34)

                            tataTCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCt                                                             <  1:3297445/91‑1 (MQ=34)

                             atatCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTa                                                            <  1:1970795/91‑1 (MQ=34)

                             atatCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTa                                                            <  1:1971196/91‑1 (MQ=34)

                              tatCTTTGTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTaa                                                           <  1:2085508/91‑1 (MQ=21)

                               atCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTaaa                                                          >  1:3254331/1‑91 (MQ=34)

                                tacaaaatggaattgtaagtaacatattgtctttgcacctaaatacagaagacaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAAc                                                         >  1:3226555‑M2/56‑91 (MQ=255)

                                 cTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACt                                                        <  1:946537/91‑1 (MQ=34)

                                  tttttttATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTg                                                       <  1:3813487/91‑1 (MQ=34)

                                  tttttttATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTg                                                       <  1:3813904/91‑1 (MQ=34)

                                    tttttATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGtt                                                     <  1:2307218/91‑1 (MQ=34)

                                        tATTTTTCCATATATCACTTGTCTTCTGTATTTNGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTtgtg                                                 <  1:1057380/91‑1 (MQ=21)

                                        tATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTtgtg                                                 <  1:2474601/91‑1 (MQ=34)

                                        tATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTtgtg                                                 <  1:3640157/91‑1 (MQ=34)

                                        tATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTtgtg                                                 <  1:702902/91‑1 (MQ=34)

                                         aTTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTgtgt                                                >  1:3943841/1‑91 (MQ=34)

                                           ttttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCa                                              <  1:4097144/91‑1 (MQ=33)

                                           ttttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCa                                              <  1:4117855/91‑1 (MQ=34)

                                           ttttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCa                                              <  1:512867/91‑1 (MQ=34)

                                            tttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAg                                             <  1:3723803/91‑1 (MQ=34)

                                              tCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGAt                                           >  1:3773120/1‑91 (MQ=34)

                                               ccATATATCACTTGTCTTCTGTATTTAGGTGCAAAGCCAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATg                                          >  1:1200888/1‑91 (MQ=21)

                                               ccATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATg                                          >  1:2792316/1‑91 (MQ=34)

                                                cATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGa                                         >  1:368517/1‑91 (MQ=34)

                                                cATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGa                                         >  1:3066328/1‑91 (MQ=34)

                                                 tcttatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGAc                                        <  1:1050794/88‑1 (MQ=21)

                                                 tcttatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGAc                                        <  1:1050765/88‑1 (MQ=21)

                                                 atatatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGAc                                        <  1:3806060/91‑1 (MQ=34)

                                                 atatatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGAc                                        <  1:2694069/91‑1 (MQ=34)

                                                   atatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACAt                                      <  1:614509/91‑1 (MQ=34)

                                                     atCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGTTGACATTa                                    >  1:1831902/1‑91 (MQ=21)

                                                     atCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTa                                    >  1:442492/1‑91 (MQ=34)

                                                      tCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTaa                                   >  1:2616013/1‑91 (MQ=34)

                                                      tCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTaa                                   >  1:2622143/1‑91 (MQ=34)

                                                       cACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTaaa                                  <  1:4061592/91‑1 (MQ=34)

                                                         cTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATa                                <  1:2826878/91‑1 (MQ=34)

                                                          ttgtctttgcacctaaatacagaagacaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAg                               >  1:1639956‑M2/30‑91 (MQ=255)

                                                          TTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGATATTAAATAg                               <  1:333715‑M1/91‑1 (MQ=255)

                                                          TTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAg                               <  1:400583‑M1/91‑1 (MQ=255)

                                                          TTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAg                               >  1:1539256‑M1/1‑91 (MQ=255)

                                                            GTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGCCATTAAATAGCa                             <  1:4121969‑M1/91‑1 (MQ=255)

                                                              CTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCAtc                           <  1:557627‑M1/91‑1 (MQ=255)

                                                               TTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAGCTGTTTGTGTCAGATGACATTAAATAGCAtct                          >  1:563219‑M1/1‑91 (MQ=255)

                                                                TCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCAtctc                         <  1:928157‑M1/91‑1 (MQ=255)

                                                                TCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCAtctc                         >  1:1089088‑M1/1‑91 (MQ=255)

                                                                 ctGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATctcc                        >  1:281741/1‑91 (MQ=34)

                                                                  tGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATctcct                       >  1:313645/1‑91 (MQ=34)

                                                                       ttAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCgtgt                  <  1:1205564/91‑1 (MQ=33)

                                                                       ttAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCgtgt                  <  1:2103061/91‑1 (MQ=34)

                                                                       ttAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCgtgt                  <  1:1205683/91‑1 (MQ=34)

                                                                       ttAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCgtgt                  <  1:2503014/91‑1 (MQ=34)

                                                                        tAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGtt                 <  1:3565722/91‑1 (MQ=34)

                                                                        tAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGtt                 >  1:3434643/1‑91 (MQ=34)

                                                                        tAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGtt                 >  1:3165982/1‑91 (MQ=34)

                                                                         aGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTg                >  1:937640/1‑91 (MQ=34)

                                                                         aGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTg                <  1:369115/91‑1 (MQ=34)

                                                                          ggTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAATCTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTgg               >  1:4152020/1‑90 (MQ=21)

                                                                          ggTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGa               >  1:1993455/1‑91 (MQ=33)

                                                                          ggTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGa               >  1:2178138/1‑91 (MQ=34)

                                                                          ggTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGa               <  1:2779939/91‑1 (MQ=34)

                                                                          ggTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGa               >  1:4152284/1‑91 (MQ=34)

                                                                            tGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGatt             >  1:533093/1‑91 (MQ=34)

                                                                            tGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCGAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGatt             >  1:3744711/1‑91 (MQ=21)

                                                                             gCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGatta            >  1:1536462/1‑91 (MQ=33)

                                                                             gCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGatta            >  1:4105560/1‑91 (MQ=34)

                                                                             gCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGatta            >  1:373462/1‑91 (MQ=34)

                                                                              cAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTACACTGTACGTGTCAGATGACATTAAATGGCATTGCCTCGTGTTGattat           >  1:1647784/1‑91 (MQ=11)

                                                                               aaaGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGattatt          <  1:964230/91‑1 (MQ=34)

                                                                                aagacaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTAttt         <  1:1208071‑M2/84‑1 (MQ=255)

                                                                                  gacaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttg       >  1:2101468‑M2/6‑91 (MQ=255)

                                                                                  gacaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttg       >  1:2177069‑M2/6‑91 (MQ=255)

                                                                                  gacaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttg       <  1:1583467‑M2/86‑1 (MQ=255)

                                                                                   acaaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttgg      <  1:611461‑M2/87‑1 (MQ=255)

                                                                                    caaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttggt     <  1:2426874‑M2/88‑1 (MQ=255)

                                                                                     aaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttggtt    >  1:1723448‑M2/3‑91 (MQ=255)

                                                                                     aaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttggtt    >  1:1723589‑M2/3‑91 (MQ=255)

                                                                                     aaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttggtt    >  1:1724177‑M2/3‑91 (MQ=255)

                                                                                     aaTATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTttagtt    >  1:3348954‑M2/3‑91 (MQ=255)

TTTCACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGG  >  USA300TCH1516_ALE/1918264‑1918441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.