| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1918322 = | 60 (0.610) | 4 (0.040) | 3/146 | NT | 5.6% | intergenic (‑40/+458) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1918351 = | 80 (0.890) | intergenic (‑69/+429) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
GCCTCTGCTTCAATTATCTCTACACCTTTTCTTTCACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAG > USA300TCH1516_ALE/1918233‑1918412 | aactaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacatatt > 1:3348954‑M1/90‑91 (MQ=255)aaccaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacatatt > 1:3908552‑M1/90‑91 (MQ=255)aaccaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacatatt > 1:1724177‑M1/90‑91 (MQ=255)aaccaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacatatt > 1:1723589‑M1/90‑91 (MQ=255)aaccaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacatatt > 1:1723568‑M1/90‑91 (MQ=255)aaccaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacatatt > 1:1723448‑M1/90‑91 (MQ=255) accaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTg > 1:1103399‑M1/89‑91 (MQ=255) accaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTg < 1:2426874‑M1/3‑1 (MQ=255) ccaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGt < 1:611539‑M1/4‑1 (MQ=255) ccaaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGt < 1:611461‑M1/4‑1 (MQ=255) caaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGtc < 1:1583467‑M1/5‑1 (MQ=255) caaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGtc > 1:2101468‑M1/87‑91 (MQ=255) caaaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGtc > 1:2177069‑M1/87‑91 (MQ=255) aaataatcaacacgaggagatgctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGtctt < 1:1208071‑M1/7‑1 (MQ=255) ctatttaatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGTCTTCTGTATTTAGGTGCAAAGACaa > 1:1639956‑M1/63‑91 (MQ=255) ttaatgtcatctgacacaaacagtttagcacatacgaaatggaattgtaagtaacataTTGTCTTCTGTATTTAGGTGCAAAGACAATATg > 1:979705‑M1/59‑91 (MQ=255) ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt > 1:23739/1‑91 (MQ=31) ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt > 1:1013873/1‑91 (MQ=31) ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt < 1:3065716/91‑1 (MQ=31) ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt < 1:4013341/91‑1 (MQ=31) ttcACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt > 1:1591062/1‑91 (MQ=31) taatgtcatctgacacaaacagtttagcacatacaaaatggaattgtaagtaacataTTGTCTTCTGTATTTAGGTGCAAAGACAATATGt > 1:2494750‑M1/58‑91 (MQ=255) tcACATCATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATCTCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGtt < 1:2698187/91‑1 (MQ=12) cacaTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGtta < 1:2826696/91‑1 (MQ=33) cacaTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGtta < 1:2826653/91‑1 (MQ=33) cacaTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGtta > 1:2892898/1‑91 (MQ=33) cacaTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGtta < 1:1653169/91‑1 (MQ=33) caTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGttact < 1:3984835/91‑1 (MQ=34) caTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGttact > 1:3004166/1‑91 (MQ=34) aTAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGttactt < 1:3801288/91‑1 (MQ=34) aTTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACa > 1:2278499/1‑91 (MQ=34) aTTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACa > 1:2278418/1‑91 (MQ=34) aTTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACa > 1:2887298/1‑91 (MQ=34) ttGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACaa < 1:3700910/91‑1 (MQ=34) ttGACGCAATATAATCCCTATAACTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGATGCAAAGACAATATGTTACTTACaa > 1:3870944/1‑91 (MQ=16) cAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCAt > 1:3512684/1‑91 (MQ=34) aaTATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCAtt < 1:2190011/91‑1 (MQ=33) tataATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCAtttt < 1:2122996/91‑1 (MQ=34) taATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGt > 1:1445306/1‑91 (MQ=34) taATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGt > 1:657942/1‑91 (MQ=34) gtttagcacatacaaaatggaattgtaagtaacataTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTa > 1:3226555‑M1/37‑91 (MQ=255) aaTCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTa > 1:3435117/1‑91 (MQ=34) cccTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTAtgt > 1:2839253/1‑91 (MQ=33) cccTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTAtgt > 1:2838513/1‑91 (MQ=34) cccTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTAtgt < 1:2472164/91‑1 (MQ=34) ccTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTAtgtg > 1:1861706/1‑91 (MQ=34) tataTCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCt < 1:3297445/91‑1 (MQ=34) atatCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTa < 1:1971196/91‑1 (MQ=34) atatCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTa < 1:1970795/91‑1 (MQ=34) tatCTTTGTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTaa < 1:2085508/91‑1 (MQ=21) atCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTaaa > 1:3254331/1‑91 (MQ=34) cTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACt < 1:946537/91‑1 (MQ=34) tttttttATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTg < 1:3813904/91‑1 (MQ=34) tttttttATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTg < 1:3813487/91‑1 (MQ=34) tttttATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGtt < 1:2307218/91‑1 (MQ=34) tttttATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGtt < 1:2091914/91‑1 (MQ=34) tATTTTTCCATATATCACTTGTCTTCTGTATTTNGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTtgtg < 1:1057380/91‑1 (MQ=21) tATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTtgtg < 1:2474601/91‑1 (MQ=34) tATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTtgtg < 1:702902/91‑1 (MQ=34) tATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTtgtg < 1:3640157/91‑1 (MQ=34) aTTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTgtgt > 1:3943841/1‑91 (MQ=34) ttttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCa < 1:512867/91‑1 (MQ=34) ttttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCa < 1:4117855/91‑1 (MQ=34) ttttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCa < 1:512972/91‑1 (MQ=34) ttttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCa < 1:4097144/91‑1 (MQ=33) ttttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCa < 1:2377165/91‑1 (MQ=34) tttCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAg < 1:3723803/91‑1 (MQ=34) tCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGAt > 1:3773120/1‑91 (MQ=34) ccATATATCACTTGTCTTCTGTATTTAGGTGCAAAGCCAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATg > 1:1200888/1‑91 (MQ=21) ccATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATg > 1:2792316/1‑91 (MQ=34) ccATATATCACTCGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCATATg > 1:3206661/1‑91 (MQ=255) cATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGa > 1:368517/1‑91 (MQ=34) cATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGa > 1:3066328/1‑91 (MQ=34) tcttatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGAc < 1:1050794/88‑1 (MQ=21) tcttatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGAc < 1:1050765/88‑1 (MQ=21) atatatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGAc < 1:3806060/91‑1 (MQ=34) atatatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGAc < 1:2694069/91‑1 (MQ=34) atatCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACAt < 1:614509/91‑1 (MQ=34) atCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGTTGACATTa > 1:1831902/1‑91 (MQ=21) atCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTa > 1:442492/1‑91 (MQ=34) tCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTaa > 1:2616013/1‑91 (MQ=34) tCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTaa > 1:2622143/1‑91 (MQ=34) cACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTaaa < 1:4061592/91‑1 (MQ=34) cACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTaaa < 1:4061679/91‑1 (MQ=34) cTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATa < 1:2826878/91‑1 (MQ=34) TTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGATATTAAATAg < 1:333715‑M1/91‑1 (MQ=255) TTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGATATTAAATAg < 1:333695‑M1/91‑1 (MQ=255) TTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAg > 1:1539256‑M1/1‑91 (MQ=255) TTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAg < 1:400583‑M1/91‑1 (MQ=255) | GCCTCTGCTTCAATTATCTCTACACCTTTTCTTTCACATAATTGACGCAATATAATCCCTATATCTTTTTTTATTTTTCCATATATCACTTGTCTTCTGTATTTAGGTGCAAAGACAATATGTTACTTACAATTCCATTTTGTATGTGCTAAACTGTTTGTGTCAGATGACATTAAATAG > USA300TCH1516_ALE/1918233‑1918412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |