| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1928296 | 146 (1.480) | 9 (0.100) | 8/140 | NT | 6.3% | intergenic (‑250/+51) | USA300HOU_RS09565/USA300HOU_RS09575 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1928318 | 138 (1.600) | intergenic (‑272/+29) | USA300HOU_RS09565/USA300HOU_RS09575 | hypothetical protein/hypothetical protein | |||||
TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1928197‑1928296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctatgaaGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA < USA300TCH1516_ALE/1928318‑1928230 TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAAT < 1:2549474/91‑1TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAAT < 1:3450610/91‑1TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAAT > 1:4085391/1‑91 CCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATG < 1:3496189/91‑1 CCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATG < 1:3496392/91‑1 CCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATG < 1:3553700/91‑1 GCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGC < 1:797026/91‑1 GCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGC < 1:769183/91‑1 GCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGC > 1:373546/1‑91 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 1:1096853/91‑1 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 1:2637087/91‑1 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 1:1996610/91‑1 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 1:3691381/91‑1 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 1:3843125/91‑1 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 1:3843223/91‑1 TCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTAT < 1:1377242/91‑1 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 1:4011875/91‑1 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 1:1499684/91‑1 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 1:827661/91‑1 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 1:1390619/91‑1 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 1:3424876/91‑1 ATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGA > 1:2813819/1‑91 TATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA < 1:1241059/91‑1 TGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGA < 1:1975483/91‑1 TTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTT < 1:3276412/91‑1 CAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATA < 1:1391291/91‑1 CAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATA < 1:1284500/91‑1 ATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGC < 1:2232630/91‑1 ATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCAT < 1:870503/91‑1 TTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATT < 1:745561/91‑1 TTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATT < 1:744545/91‑1 TTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGTAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTA < 1:3504210/91‑1 aatGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAAT > 1:822908/4‑91 TGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATA > 1:1808536/1‑91 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA < 1:1994765/91‑1 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA > 1:3738316/1‑91 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA > 1:3932535/1‑91 GGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA > 1:1993839/1‑91 GCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAAT > 1:1179696/1‑91 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT > 1:189304/1‑91 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:1733295/91‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:1733490/91‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT > 1:189303/1‑91 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT > 1:189514/1‑91 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:2092748/91‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:2374083/91‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:2374728/91‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:2545799/91‑1 ATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGA > 1:1394876/1‑91 TGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAA > 1:4148968/1‑91 AAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA < 1:2323259/91‑1 AAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAAGTGGAAAACCGTCAATCAAATAATTGAAAA > 1:3331358/1‑91 TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1928197‑1928296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctatgaaGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA < USA300TCH1516_ALE/1928318‑1928230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |