BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1928296	146 (1.480)	9 (0.100)	8/140	NT	6.3%	intergenic (‑250/+51)	USA300HOU_RS09565/USA300HOU_RS09575	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1928318	138 (1.600)	9 (0.100)	8/140	NT	6.3%	intergenic (‑272/+29)	USA300HOU_RS09565/USA300HOU_RS09575	hypothetical protein/hypothetical protein

Only 100 of 189 total aligned reads displayed.

CTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAATT  >  USA300TCH1516_ALE/1928228‑1928407

cTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATttc                                                                                           >  1:1936505/1‑91 (MQ=255)

  ttttCAATTATTTGATTGACGGTTTTCCACTTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCtt                                                                                         >  1:3331358‑M2/1‑89 (MQ=255)

  ttttCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCtt                                                                                         <  1:2323259‑M2/91‑3 (MQ=255)

       aaTTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatag                                                                                    <  1:2092748‑M2/91‑8 (MQ=255)

       aaTTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatag                                                                                    <  1:2374083‑M2/91‑8 (MQ=255)

       aaTTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatag                                                                                    <  1:1733490‑M2/91‑8 (MQ=255)

       aaTTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatag                                                                                    >  1:189303‑M2/1‑84 (MQ=255)

       aaTTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatag                                                                                    >  1:189514‑M2/1‑84 (MQ=255)

         ttattTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTttcatagcc                                                                                  >  1:1993839‑M2/1‑82 (MQ=255)

            tttGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAAt                                                                               >  1:3009606/1‑91 (MQ=255)

               gattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCt                                                                            <  1:1658763/91‑1 (MQ=255)

               gattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCt                                                                            <  1:3624086/91‑1 (MQ=255)

               gattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCt                                                                            >  1:4093475/1‑91 (MQ=255)

               gattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAAGTCTATCCCCATAGATTTCTTCATAGCCAATGCt                                                                            >  1:3677323/1‑91 (MQ=255)

               gatcgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTCCTTCATAGCCAATGCt                                                                            <  1:3740345/91‑1 (MQ=255)

                attgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTa                                                                           <  1:2974019/91‑1 (MQ=255)

                 ttgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTaa                                                                          >  1:1456355/1‑91 (MQ=255)

                 ttgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTaa                                                                          >  1:2430645/1‑91 (MQ=255)

                 ttgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTaa                                                                          >  1:470840/1‑91 (MQ=255)

                  tgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAt                                                                         >  1:575285/1‑91 (MQ=255)

                  tgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAt                                                                         <  1:984685/91‑1 (MQ=255)

                   gaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAtt                                                                        >  1:1012285/1‑91 (MQ=255)

                   gaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAtt                                                                        <  1:1590825/91‑1 (MQ=255)

                   gaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAtt                                                                        >  1:3950438/1‑91 (MQ=255)

                   gaCGATTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAtt                                                                        <  1:1494643/91‑1 (MQ=255)

                      ggTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGt                                                                     <  1:3870124/91‑1 (MQ=255)

                      ggTTTTCCAATTTTTTACTTCATGCACTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGt                                                                     <  1:3870165/91‑1 (MQ=255)

                         tttCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTc                                                                  <  1:580856/91‑1 (MQ=255)

                         tttCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTc                                                                  >  1:2781173/1‑91 (MQ=255)

                           tCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCAt                                                                <  1:1489324/91‑1 (MQ=255)

                            ccAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATg                                                               >  1:1120348/1‑91 (MQ=255)

                             cAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGt                                                              >  1:1299172/1‑91 (MQ=255)

                              aaTTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTc                                                             <  1:3150136/91‑1 (MQ=255)

                              aaTTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTc                                                             <  1:1755549/91‑1 (MQ=255)

                               tttttttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCGCATTTGTTTCATGTCa                                                            <  1:2319076/90‑1 (MQ=255)

                               aTTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCa                                                            >  1:1466988/1‑91 (MQ=255)

                               aTTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCa                                                            <  1:4016850/91‑1 (MQ=255)

                               aTTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCa                                                            >  1:168479/1‑91 (MQ=255)

                                ttttttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCAt                                                           <  1:180670/91‑1 (MQ=255)

                                 tttttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCAtt                                                          <  1:2348838/91‑1 (MQ=255)

                                    ttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCt                                                       <  1:473160/91‑1 (MQ=255)

                                    ttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCt                                                       <  1:2294939/91‑1 (MQ=255)

                                      aCTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCttt                                                     >  1:2386067/1‑91 (MQ=255)

                                      aCTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCttt                                                     >  1:1709411/1‑91 (MQ=255)

                                       cTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCGTGTCATTTCTTTa                                                    >  1:4145461/1‑91 (MQ=255)

                                       cTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTa                                                    >  1:267500/1‑91 (MQ=255)

                                        ttCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTaa                                                   <  1:2489459/91‑1 (MQ=255)

                                         tCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTaaa                                                  >  1:2182900/1‑91 (MQ=255)

                                             gCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTc                                              <  1:3466183/91‑1 (MQ=255)

                                              ctctTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTcc                                             >  1:1508962/1‑91 (MQ=255)

                                              ctctTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTcc                                             <  1:315237/91‑1 (MQ=255)

                                                 ttttAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaa                                          >  1:2589647/1‑91 (MQ=255)

                                                 ttttAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaa                                          >  1:1538970/1‑91 (MQ=255)

                                                   ttAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTGAAATTCCTaaaa                                        <  1:3177637/91‑1 (MQ=255)

                                                   ttAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaaaa                                        >  1:1193679/1‑91 (MQ=255)

                                                    tAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaaaaa                                       <  1:3014252/91‑1 (MQ=255)

                                                    tAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaaaaa                                       <  1:3026854/91‑1 (MQ=255)

                                                       aaaaTGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAatat                                    >  1:1014972/1‑91 (MQ=255)

                                                        aaaTGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAatata                                   >  1:1438436/1‑91 (MQ=255)

                                                         aaTGGCTATGAAAAATTCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaa                                  <  1:744545‑M2/91‑58 (MQ=255)

                                                          aTGGCTATGAAAAATTCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaat                                 <  1:870503‑M2/91‑59 (MQ=255)

                                                          aTGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAAtatata                                 >  1:2526189/1‑91 (MQ=255)

                                                          aTGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAAtatata                                 <  1:1574779/91‑1 (MQ=255)

                                                           tGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATaa                                <  1:859313/91‑1 (MQ=255)

                                                            ggCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATaaa                               >  1:1731305/1‑91 (MQ=255)

                                                             gCTATGATAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAAc                              <  1:2077450/91‑1 (MQ=255)

                                                             gCTATGAAAAATTCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaataat                              <  1:2232630‑M2/91‑62 (MQ=255)

                                                             gCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAAc                              >  1:1355741/1‑91 (MQ=255)

                                                              cTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACt                             >  1:2216222/1‑91 (MQ=255)

                                                              cTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACt                             >  1:2945600/1‑91 (MQ=255)

                                                               tATGAAAAATTCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaataattg                            <  1:1391291‑M2/91‑64 (MQ=255)

                                                               tATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTa                            >  1:2151621/1‑91 (MQ=255)

                                                               tATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTa                            >  1:1324649/1‑91 (MQ=255)

                                                               tATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTa                            >  1:1506197/1‑91 (MQ=255)

                                                                aTGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTaa                           >  1:1111936/1‑91 (MQ=255)

                                                                aTGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTaa                           <  1:2545166/91‑1 (MQ=255)

                                                                  gAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTaaaa                         >  1:1447900/1‑91 (MQ=255)

                                                                   aaaaaTTCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaataattgaaaa                        <  1:3276412‑M2/91‑68 (MQ=255)

                                                                   aaaaaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAg                        <  1:2466753/91‑1 (MQ=255)

                                                                     aaaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCa                      <  1:3135423/91‑1 (MQ=255)

                                                                     aaaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCa                      <  1:1845535/91‑1 (MQ=255)

                                                                     aaaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCa                      <  1:1845003/91‑1 (MQ=255)

                                                                     aaaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCa                      <  1:3138748/91‑1 (MQ=255)

                                                                        ttCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATaa                   >  1:1362863/1‑91 (MQ=255)

                                                                         tCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaataattgaaaaagaaca                  <  1:1975483‑M2/91‑74 (MQ=255)

                                                                           tATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTa                >  1:2649033/1‑91 (MQ=255)

                                                                           tATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTa                >  1:2685481/1‑91 (MQ=255)

                                                                            aTCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTaa               >  1:2125652/1‑91 (MQ=255)

                                                                             tCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAac              >  1:3915784/1‑91 (MQ=255)

                                                                             tCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAac              >  1:1828479/1‑91 (MQ=255)

                                                                               cccATAGATTTCTTCATAGCCAATGCTAATTTCTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTACAAGCATAAGTAacac            <  1:3528549/91‑1 (MQ=255)

                                                                                 cATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAg          <  1:379601/91‑1 (MQ=255)

                                                                                  aTAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGc         <  1:4064224/91‑1 (MQ=255)

                                                                                   tAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCa        <  1:1165032/91‑1 (MQ=255)

                                                                                   tAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCa        >  1:3296499/1‑91 (MQ=255)

                                                                                     gATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCaaa      >  1:3643410/1‑91 (MQ=255)

                                                                                     gATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCaaa      <  1:777116/91‑1 (MQ=255)

                                                                                      aTTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCaaaa     <  1:3973123/91‑1 (MQ=255)

                                                                                       tttCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCaaaaa    <  1:617736/91‑1 (MQ=255)

                                                                                         tcttcATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAAtt  >  1:194124/1‑91 (MQ=255)

CTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAATT  >  USA300TCH1516_ALE/1928228‑1928407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.